Gm33586 Gene Detail

Summary

• Symbol
  Gm33586
• Name
  predicted gene, 33586
• Synonyms
  Gm45404

• Feature Type
  lncRNA gene
• IDs
  MGI:5592745
  NCBI Gene: 102636550
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:112582352-112610099 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1054 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592745	lncRNA gene	Chr7:112565875-112610099 (+)
129S1/SvImJ	ENSMUSG00200035096	lncRNA gene	Chr7:99124932-99151394 (+)
A/J	ENSMUSG00195040027	lncRNA gene	Chr7:103628664-103655119 (+)
AKR/J	ENSMUSG00220040349	lncRNA gene	Chr7:97031562-97058014 (+)
BALB/cJ	ENSMUSG00180045716	lncRNA gene	Chr7:100296745-100323197 (+)
C3H/HeJ	ENSMUSG00175025405	lncRNA gene	Chr7:100932537-100959415 (+)
C57BL/6NJ	ENSMUSG00215051778	lncRNA gene	Chr7:100242512-100269502 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044891	lncRNA gene	Chr7:103631421-103657558 (+)
CBA/J	ENSMUSG00210048650	lncRNA gene	Chr7:100759493-100786375 (+)
DBA/2J	ENSMUSG00185022558	lncRNA gene	Chr7:105109684-105136566 (+)
FVB/NJ	ENSMUSG00205049849	lncRNA gene	Chr7:100722821-100749815 (+)
JF1/MsJ	ENSUMUG00000052500	lncRNA gene	Chr7:110136722-110163584 (+)
LP/J	ENSMUSG00230038506	lncRNA gene	Chr7:111210601-111237059 (+)
NOD/ShiLtJ	ENSMUSG00190046801	lncRNA gene	Chr7:100921050-100947503 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010044053	lncRNA gene	Chr7:99272938-99300376 (+)
SPRET/EiJ	ENSMSPG00010042427	lncRNA gene	Chr7:100443810-100476559 (+)
WSB/EiJ	ENSIUOG00005012262	lncRNA gene	Chr7:101579111-101606100 (+)

Homology

• Gene Tree
  Gm33586
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  6

• Ensembl
  ENSMUSG00000110207 (Evidence)
• NCBI Gene
  102636550

Representative Sequences			Length	Strain/Species
genomic	102636550	NCBI Gene Model | MGI Sequence Detail	27748	C57BL/6J
transcript	BC042407	GenBank | ENA | DDBJ | MGI Sequence Detail	399	FVB/N

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5791240

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm33586:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68603	Chr7:112593103-112593115 (+)	10,757 bp