Gm33576 Gene Detail

Summary

• Symbol
  Gm33576
• Name
  predicted gene, 33576

• Feature Type
  lncRNA gene
• IDs
  MGI:5592735
  NCBI Gene: 102636539
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:3763799-3807425 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  938 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592735	lncRNA gene	Chr6:3763736-3807431 (+)
129S1/SvImJ	ENSMUSG00200001828	lncRNA gene	Chr6:835203-878773 (+)
A/J	ENSMUSG00195001973	lncRNA gene	Chr6:716336-759904 (+)
AKR/J	ENSMUSG00220020980	lncRNA gene	Chr6:628212-671786 (+)
BALB/cJ	ENSMUSG00180001519	lncRNA gene	Chr6:851951-895529 (+)
C3H/HeJ	ENSMUSG00175007492	lncRNA gene	Chr6:680578-724150 (+)
C57BL/6NJ	ENSMUSG00215014561	lncRNA gene	Chr6:804135-847728 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026329	lncRNA gene	Chr6:730508-773076 (+)
CBA/J	ENSMUSG00210021304	lncRNA gene	Chr6:617659-661229 (+)
DBA/2J	ENSMUSG00185025473	lncRNA gene	Chr6:812226-855796 (+)
FVB/NJ	ENSMUSG00205016364	lncRNA gene	Chr6:819911-863478 (+)
JF1/MsJ	ENSUMUG00000012148	lncRNA gene	Chr6:829076-865166 (+)
LP/J	ENSMUSG00230016770	lncRNA gene	Chr6:1811929-1855499 (+)
NOD/ShiLtJ	ENSMUSG00190016900	lncRNA gene	Chr6:537379-580945 (+)
NZO/HlLtJ	ENSMUSG00225018731	lncRNA gene	Chr6:3630076-3673660 (+)
PWK/PhJ	ENSLUMG00010024794	lncRNA gene	Chr6:623846-659939 (+)
SPRET/EiJ	ENSMSPG00010002822	lncRNA gene	Chr6:472745-509637 (+)
WSB/EiJ	ENSIUOG00005004323	lncRNA gene	Chr6:802114-845723 (+)

Homology

• Gene Tree
  Gm33576
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000120192 (Evidence)
• NCBI Gene
  102636539

Representative Sequences			Length	Strain/Species
genomic	102636539	NCBI Gene Model | MGI Sequence Detail	43627	C57BL/6J
transcript	XR_377297	RefSeq | MGI Sequence Detail	810	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33576:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54701	Chr6:3763846-3763857 (+)	53 bp