Gm33508 Gene Detail

Summary

• Symbol
  Gm33508
• Name
  predicted gene, 33508

• Feature Type
  lncRNA gene
• IDs
  MGI:5592667
  NCBI Gene: 102636445
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:24752836-24765505 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  465 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592667	lncRNA gene	Chr17:24752836-24765753 (+)
129S1/SvImJ	ENSMUSG00200054327	lncRNA gene	Chr17:20199360-20211790 (+)
A/J	ENSMUSG00195054382	lncRNA gene	Chr17:21218196-21230626 (+)
AKR/J	ENSMUSG00220028958	lncRNA gene	Chr17:20264576-20276953 (+)
BALB/cJ	ENSMUSG00180051555	lncRNA gene	Chr17:20491836-20504166 (+)
C3H/HeJ	ENSMUSG00175053705	lncRNA gene	Chr17:20250254-20262577 (+)
C57BL/6NJ	ENSMUSG00215054280	lncRNA gene	Chr17:20260815-20273485 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051511	lncRNA gene	Chr17:20831338-20843664 (+)
CBA/J	ENSMUSG00210042651	lncRNA gene	Chr17:20089085-20101404 (+)
DBA/2J	ENSMUSG00185053439	lncRNA gene	Chr17:22306525-22318968 (+)
FVB/NJ	ENSMUSG00205053608	lncRNA gene	Chr17:20558214-20570663 (+)
JF1/MsJ	ENSUMUG00000057491	lncRNA gene	Chr17:21752610-21765283 (+)
LP/J	ENSMUSG00230055116	lncRNA gene	Chr17:23704022-23716441 (+)
NOD/ShiLtJ	ENSMUSG00190054151	lncRNA gene	Chr17:20195267-20207702 (+)
NZO/HlLtJ	ENSMUSG00225054673	lncRNA gene	Chr17:25625655-25638098 (+)
PWK/PhJ	ENSLUMG00010020668	lncRNA gene	Chr17:19661966-19674303 (+)
SPRET/EiJ	ENSMSPG00010049734	lncRNA gene	Chr17:20998273-21010572 (+)
WSB/EiJ	ENSIUOG00005052176	lncRNA gene	Chr17:20944176-20956513 (+)

Homology

• Gene Tree
  Gm33508
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000117423 (Evidence)
• NCBI Gene
  102636445

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117423	Ensembl Gene Model | MGI Sequence Detail	12670	C57BL/6J
transcript	ENSMUST00000234764	Ensembl | MGI Sequence Detail	1524	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm33508:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143045	Chr17:24752859-24752874 (+)	31 bp