Gm33474 Gene Detail

Summary

• Symbol
  Gm33474
• Name
  predicted gene, 33474
• Synonyms
  Gm43419

• Feature Type
  lncRNA gene
• IDs
  MGI:5592633
  NCBI Gene: 102636399
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:107196618-107225694 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  716 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592633	lncRNA gene	Chr5:107196356-107228453 (+)
129S1/SvImJ	ENSMUSG00200006533	lncRNA gene	Chr5:100934158-100961504 (+)
A/J	ENSMUSG00195035291	lncRNA gene	Chr5:100402598-100429899 (+)
AKR/J	ENSMUSG00220041088	lncRNA gene	Chr5:99952820-99980166 (+)
BALB/cJ	ENSMUSG00180035403	lncRNA gene	Chr5:100556167-100583511 (+)
C3H/HeJ	ENSMUSG00175047708	lncRNA gene	Chr5:102592712-102620020 (+)
C57BL/6NJ	ENSMUSG00215022883	lncRNA gene	Chr5:100599507-100626808 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006130	lincRNA gene	Chr5:99948090-99955432 (+)
CAST/EiJ	ENSTCUG00005025216	lncRNA gene	Chr5:99820136-99847818 (+)
CBA/J	ENSMUSG00210036728	lncRNA gene	Chr5:101350300-101377612 (+)
DBA/2J	ENSMUSG00185048854	lncRNA gene	Chr5:104250471-104277794 (+)
FVB/NJ	ENSMUSG00205043555	lncRNA gene	Chr5:100277485-100304788 (+)
JF1/MsJ	ENSUMUG00000019168	lncRNA gene	Chr5:107305099-107332771 (+)
LP/J	ENSMUSG00230031662	lncRNA gene	Chr5:108475267-108502606 (+)
NOD/ShiLtJ	ENSMUSG00190026686	lncRNA gene	Chr5:100260938-100288250 (+)
NZO/HlLtJ	ENSMUSG00225026206	lncRNA gene	Chr5:116097118-116124464 (+)
PWK/PhJ	ENSLUMG00010016955	lncRNA gene	Chr5:99303036-99330722 (+)
SPRET/EiJ	ENSMSPG00010046584	lncRNA gene	Chr5:102399968-102427347 (+)
WSB/EiJ	ENSIUOG00005047135	lncRNA gene	Chr5:102974432-103001722 (+)

Homology

• Gene Tree
  Gm33474
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm33474
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  8

• Ensembl
  ENSMUSG00000106554 (Evidence)
• NCBI Gene
  102636399

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106554	Ensembl Gene Model | MGI Sequence Detail	29077	C57BL/6J
transcript	ENSMUST00000243920	Ensembl | MGI Sequence Detail	1845	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5663556

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm33474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47759	Chr5:107203040-107203067 (+)	6,436 bp