Gm33459 Gene Detail

Summary

• Symbol
  Gm33459
• Name
  predicted gene, 33459

• Feature Type
  lncRNA gene
• IDs
  MGI:5592618
  NCBI Gene: 102636374
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:74427746-74436092 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  307 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592618	lncRNA gene	Chr9:74426978-74436092 (-)
129S1/SvImJ	ENSMUSG00200019557	lncRNA gene	Chr9:71534511-71542717 (-)
A/J	ENSMUSG00195011024	lncRNA gene	Chr9:71291800-71300042 (-)
AKR/J	ENSMUSG00220015162	lncRNA gene	Chr9:71419823-71428055 (-)
BALB/cJ	ENSMUSG00180020139	lncRNA gene	Chr9:71406465-71414716 (-)
C3H/HeJ	ENSMUSG00175012004	lncRNA gene	Chr9:71419486-71427728 (-)
C57BL/6NJ	ENSMUSG00215017336	lncRNA gene	Chr9:71377124-71385356 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009589	lncRNA gene	Chr9:71157965-71166249 (-)
CBA/J	ENSMUSG00210013274	lncRNA gene	Chr9:71496977-71505215 (-)
DBA/2J	ENSMUSG00185007643	lncRNA gene	Chr9:71518650-71526883 (-)
FVB/NJ	ENSMUSG00205030263	lncRNA gene	Chr9:71813331-71821572 (-)
JF1/MsJ	ENSUMUG00000043147	lncRNA gene	Chr9:71535207-71542549 (-)
LP/J	ENSMUSG00230025253	lncRNA gene	Chr9:71711486-71719690 (-)
NOD/ShiLtJ	ENSMUSG00190034678	lncRNA gene	Chr9:71622131-71630370 (-)
NZO/HlLtJ	ENSMUSG00225026020	lncRNA gene	Chr9:71825099-71833337 (-)
PWK/PhJ	ENSLUMG00010016408	lncRNA gene	Chr9:71468665-71476005 (-)
SPRET/EiJ	ENSMSPG00010004344	lncRNA gene	Chr9:72575246-72583542 (-)
WSB/EiJ	ENSIUOG00005026760	lncRNA gene	Chr9:70996076-71004312 (-)

Homology

• Gene Tree
  Gm33459
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33459
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Literature Summary
  1

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  1

• Ensembl
  ENSMUSG00000120200 (Evidence)
• NCBI Gene
  102636374

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120200	Ensembl Gene Model | MGI Sequence Detail	8347	C57BL/6J
transcript	ENSMUST00000361146	Ensembl | MGI Sequence Detail	1628	Not Applicable

References

• Summaries
  All 6

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Gm33459:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90519	Chr9:74435934-74435950 (-)	150 bp
Tssr90518	Chr9:74435887-74435898 (-)	199 bp