Gm33440 Gene Detail

Summary

• Symbol
  Gm33440
• Name
  predicted gene, 33440

• Feature Type
  lncRNA gene
• IDs
  MGI:5592599
  NCBI Gene: 102636347
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:24172209-24208638 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592599	lncRNA gene	Chr11:24134890-24259341 (+)
129S1/SvImJ	ENSMUSG00200010469	lncRNA gene	Chr11:21224324-21237560 (+)
A/J	ENSMUSG00195014741	lncRNA gene	Chr11:21071429-21084666 (+)
AKR/J	ENSMUSG00220008572	lncRNA gene	Chr11:21160613-21173891 (+)
BALB/cJ	ENSMUSG00180008095	lncRNA gene	Chr11:21059374-21072695 (+)
C3H/HeJ	ENSMUSG00175017206	lncRNA gene	Chr11:21073151-21086386 (+)
C57BL/6NJ	ENSMUSG00215010445	lncRNA gene	Chr11:21144670-21157906 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007415	lncRNA gene	Chr11:21020384-21033576 (+)
CBA/J	ENSMUSG00210010192	lncRNA gene	Chr11:21063038-21076360 (+)
DBA/2J	ENSMUSG00185019360	lncRNA gene	Chr11:21164666-21177902 (+)
FVB/NJ	ENSMUSG00205021168	lncRNA gene	Chr11:21124870-21138149 (+)
JF1/MsJ	ENSUMUG00000011827	lncRNA gene	Chr11:21396437-21409728 (+)
LP/J	ENSMUSG00230016354	lncRNA gene	Chr11:22209259-22222579 (+)
NOD/ShiLtJ	ENSMUSG00190026583	lncRNA gene	Chr11:21225294-21238591 (+)
NZO/HlLtJ	ENSMUSG00225022487	lncRNA gene	Chr11:24249243-24262478 (+)
PWK/PhJ	ENSLUMG00010012478	lncRNA gene	Chr11:21068369-21081642 (+)
SPRET/EiJ	ENSMSPG00010021062	lncRNA gene	Chr11:21291660-21304897 (+)
WSB/EiJ	ENSIUOG00005013435	lncRNA gene	Chr11:21123475-21136747 (+)

Homology

• Gene Tree
  Gm33440
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33440
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  72
• RefSeq
  3

• Ensembl
  ENSMUSG00000120674 (Evidence)
• NCBI Gene
  102636347

Representative Sequences			Length	Strain/Species
genomic	102636347	NCBI Gene Model | MGI Sequence Detail	36430	C57BL/6J
transcript	XR_381108	RefSeq | MGI Sequence Detail	1325	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm33440:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100673	Chr11:24205699-24205715 (+)	33,498 bp