Gm33318 Gene Detail

Summary

• Symbol
  Gm33318
• Name
  predicted gene, 33318

• Feature Type
  lncRNA gene
• IDs
  MGI:5592477
  NCBI Gene: 102636178
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:37419445-37424340 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  307 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592477	lncRNA gene	Chr6:37419412-37424343 (+)
129S1/SvImJ	ENSMUSG00200046577	lncRNA gene	Chr6:34474067-34478968 (+)
A/J	ENSMUSG00195044399	lncRNA gene	Chr6:34445862-34450763 (+)
AKR/J	ENSMUSG00220009609	lncRNA gene	Chr6:34044531-34049432 (+)
BALB/cJ	ENSMUSG00180048630	lncRNA gene	Chr6:34574353-34579254 (+)
C3H/HeJ	ENSMUSG00175050662	lncRNA gene	Chr6:34402934-34407835 (+)
C57BL/6NJ	ENSMUSG00215048483	lncRNA gene	Chr6:34480764-34485665 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038604	lncRNA gene	Chr6:33962605-33967520 (+)
CBA/J	ENSMUSG00210052402	lncRNA gene	Chr6:34460171-34465072 (+)
DBA/2J	ENSMUSG00185050348	lncRNA gene	Chr6:34560712-34565613 (+)
FVB/NJ	ENSMUSG00205051041	lncRNA gene	Chr6:34541759-34546506 (+)
JF1/MsJ	ENSUMUG00000030499	lncRNA gene	Chr6:34215672-34216196 (+)
LP/J	ENSMUSG00230044431	lncRNA gene	Chr6:35479994-35484895 (+)
NOD/ShiLtJ	ENSMUSG00190049284	lncRNA gene	Chr6:34326942-34331843 (+)
NZO/HlLtJ	ENSMUSG00225010227	lncRNA gene	Chr6:37462570-37467471 (+)
PWK/PhJ	ENSLUMG00010047897	lncRNA gene	Chr6:33972970-33973494 (+)
SPRET/EiJ	ENSMSPG00010035154	lncRNA gene	Chr6:34558894-34563798 (+)
WSB/EiJ	ENSIUOG00005035714	lncRNA gene	Chr6:34658629-34663377 (+)

Homology

• Gene Tree
  Gm33318
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120046 (Evidence)
• NCBI Gene
  102636178

Representative Sequences			Length	Strain/Species
genomic	102636178	NCBI Gene Model | MGI Sequence Detail	4896	C57BL/6J
transcript	NR_166917	RefSeq | MGI Sequence Detail	1660	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm33318:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55612	Chr6:37419436-37419459 (+)	3 bp
Tssr55613	Chr6:37419478-37419502 (+)	45 bp