Gm33293 Gene Detail

Summary

• Symbol
  Gm33293
• Name
  predicted gene, 33293

• Feature Type
  lncRNA gene
• IDs
  MGI:5592452
  NCBI Gene: 102636139
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:67378216-67389029 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592452	lncRNA gene	Chr5:67378208-67389306 (-)
129S1/SvImJ	ENSMUSG00200036445	lncRNA gene	Chr5:63016697-63026279 (-)
A/J	ENSMUSG00195035621	lncRNA gene	Chr5:62370985-62380566 (-)
AKR/J	ENSMUSG00220004917	lncRNA gene	Chr5:62508900-62518486 (-)
BALB/cJ	ENSMUSG00180024784	lncRNA gene	Chr5:62163775-62173356 (-)
C3H/HeJ	ENSMUSG00175030218	lncRNA gene	Chr5:64191272-64200854 (-)
C57BL/6NJ	ENSMUSG00215006033	lncRNA gene	Chr5:62926849-62936432 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032365	lncRNA gene	Chr5:62084876-62094462 (-)
CBA/J	ENSMUSG00210023898	lncRNA gene	Chr5:63104130-63113712 (-)
DBA/2J	ENSMUSG00185005712	lncRNA gene	Chr5:64961658-64971239 (-)
FVB/NJ	ENSMUSG00205033276	lncRNA gene	Chr5:61913868-61923418 (-)
JF1/MsJ	ENSUMUG00000021861	lncRNA gene	Chr5:69470448-69480080 (-)
LP/J	ENSMUSG00230009571	lncRNA gene	Chr5:69629248-69638829 (-)
NOD/ShiLtJ	ENSMUSG00190004720	lncRNA gene	Chr5:62095654-62105237 (-)
NZO/HlLtJ	ENSMUSG00225010991	lncRNA gene	Chr5:74735255-74744828 (-)
PWK/PhJ	ENSLUMG00010014027	lncRNA gene	Chr5:62082078-62091665 (-)
SPRET/EiJ	ENSMSPG00010034806	lncRNA gene	Chr5:63868161-63877624 (-)
WSB/EiJ	ENSIUOG00005019322	lncRNA gene	Chr5:65071975-65081520 (-)

Homology

• Gene Tree
  Gm33293
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm33293
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000120155 (Evidence)
• NCBI Gene
  102636139

Representative Sequences			Length	Strain/Species
genomic	102636139	NCBI Gene Model | MGI Sequence Detail	10814	C57BL/6J
transcript	NR_169035	RefSeq | MGI Sequence Detail	1532	ZRU/MplStud

References

• Summaries
  All 20

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm33293:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51230	Chr5:67389026-67389029 (-)	1 bp