Gm33228 Gene Detail

Summary

• Symbol
  Gm33228
• Name
  predicted gene, 33228

• Feature Type
  lncRNA gene
• IDs
  MGI:5592387
  NCBI Gene: 102636049
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:25971890-26401755 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10805 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592387	lncRNA gene	Chr18:25954313-26463235 (+)
129S1/SvImJ	ENSMUSG00200016366	lncRNA gene	Chr18:23126742-23336311 (+)
A/J	ENSMUSG00195002439	lncRNA gene	Chr18:23306131-23514256 (+)
AKR/J	ENSMUSG00220011413	lncRNA gene	Chr18:23282779-23498745 (+)
BALB/cJ	ENSMUSG00180003545	lncRNA gene	Chr18:23746412-23954531 (+)
C3H/HeJ	ENSMUSG00175024544	lncRNA gene	Chr18:23260731-23469521 (+)
C57BL/6NJ	ENSMUSG00215021333	lncRNA gene	Chr18:22998079-23206190 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016499	lncRNA gene	Chr18:22963870-23168336 (+)
CBA/J	ENSMUSG00210016122	lncRNA gene	Chr18:23296950-23505049 (+)
DBA/2J	ENSMUSG00185023212	lncRNA gene	Chr18:23245034-23453135 (+)
FVB/NJ	ENSMUSG00205024275	lncRNA gene	Chr18:22964702-23173363 (+)
JF1/MsJ	ENSUMUG00000028473	lncRNA gene	Chr18:23341604-23547218 (+)
LP/J	ENSMUSG00230006242	lncRNA gene	Chr18:25322505-25532052 (+)
NOD/ShiLtJ	ENSMUSG00190006977	lncRNA gene	Chr18:23056916-23265031 (+)
NZO/HlLtJ	ENSMUSG00225025575	lncRNA gene	Chr18:25297072-25510697 (+)
PWK/PhJ	ENSLUMG00010003798	lncRNA gene	Chr18:23525369-23731164 (+)
SPRET/EiJ	ENSMSPG00010022662	lncRNA gene	Chr18:23409382-23618711 (+)
WSB/EiJ	ENSIUOG00005002857	lncRNA gene	Chr18:23065875-23275449 (+)

Homology

• Gene Tree
  Gm33228
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  184
• RefSeq
  25

• Ensembl
  ENSMUSG00000117604 (Evidence)
• NCBI Gene
  102636049

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117604	Ensembl Gene Model | MGI Sequence Detail	429866	C57BL/6J
transcript	ENSMUST00000288118	Ensembl | MGI Sequence Detail	2532	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33228:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150334	Chr18:25972158-25972172 (+)	275 bp