Gm33180 Gene Detail

Summary

• Symbol
  Gm33180
• Name
  predicted gene, 33180

• Feature Type
  lncRNA gene
• IDs
  MGI:5592339
  NCBI Gene: 102635981
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:59406644-59420148 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  529 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592339	lncRNA gene	Chr9:59406644-59420202 (-)
129S1/SvImJ	ENSMUSG00200036148	lncRNA gene	Chr9:56525507-56539008 (-)
A/J	ENSMUSG00195041414	lncRNA gene	Chr9:56232670-56246170 (-)
AKR/J	ENSMUSG00220031162	lncRNA gene	Chr9:56382439-56395942 (-)
BALB/cJ	ENSMUSG00180018993	lncRNA gene	Chr9:56347414-56360920 (-)
C3H/HeJ	ENSMUSG00175022720	lncRNA gene	Chr9:56359324-56372824 (-)
C57BL/6NJ	ENSMUSG00215034731	lncRNA gene	Chr9:56340679-56354184 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022487	lncRNA gene	Chr9:56268212-56281891 (-)
CBA/J	ENSMUSG00210041954	lncRNA gene	Chr9:56464104-56477636 (-)
DBA/2J	ENSMUSG00185042968	lncRNA gene	Chr9:56486102-56499602 (-)
FVB/NJ	ENSMUSG00205042611	lncRNA gene	Chr9:56801931-56815434 (-)
JF1/MsJ	ENSUMUG00000050476	lncRNA gene	Chr9:56503830-56517549 (-)
LP/J	ENSMUSG00230039190	lncRNA gene	Chr9:56725088-56738588 (-)
NOD/ShiLtJ	ENSMUSG00190044005	lncRNA gene	Chr9:56556242-56569742 (-)
NZO/HlLtJ	ENSMUSG00225028632	lncRNA gene	Chr9:56773830-56787345 (-)
PWK/PhJ	ENSLUMG00010040495	lncRNA gene	Chr9:56458795-56473030 (-)
SPRET/EiJ	ENSMSPG00010028980	lncRNA gene	Chr9:57505543-57518821 (-)
WSB/EiJ	ENSIUOG00005042316	lncRNA gene	Chr9:55963571-55977097 (-)

Homology

• Gene Tree
  Gm33180
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000111852 (Evidence)
• NCBI Gene
  102635981

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111852	Ensembl Gene Model | MGI Sequence Detail	13505	C57BL/6J
transcript	ENSMUST00000217109	Ensembl | MGI Sequence Detail	1480	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;