Gm33172 Gene Detail

Summary

• Symbol
  Gm33172
• Name
  predicted gene, 33172

• Feature Type
  lncRNA gene
• IDs
  MGI:5592331
  NCBI Gene: 102635971
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:110820412-110823232 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  331 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592331	lncRNA gene	Chr13:110820412-110823459 (+)
129S1/SvImJ	ENSMUSG00200032858	lncRNA gene	Chr13:105276965-105279923 (+)
A/J	ENSMUSG00195013448	lncRNA gene	Chr13:105807569-105810561 (+)
AKR/J	ENSMUSG00220031722	lncRNA gene	Chr13:104231629-104234625 (+)
BALB/cJ	ENSMUSG00180031930	lncRNA gene	Chr13:106382591-106385587 (+)
C3H/HeJ	ENSMUSG00175027255	lncRNA gene	Chr13:106467110-106470098 (+)
C57BL/6NJ	ENSMUSG00215026896	lncRNA gene	Chr13:106478299-106481314 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026875	lncRNA gene	Chr13:105521875-105524848 (+)
CBA/J	ENSMUSG00210010715	lncRNA gene	Chr13:105794283-105797277 (+)
DBA/2J	ENSMUSG00185027721	lncRNA gene	Chr13:109552053-109555051 (+)
FVB/NJ	ENSMUSG00205007199	lncRNA gene	Chr13:105239555-105242545 (+)
JF1/MsJ	ENSUMUG00000012901	lncRNA gene	Chr13:109037827-109040785 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020677	lncRNA gene	Chr13:106095255-106098213 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010110	lncRNA gene	Chr13:105059794-105062757 (+)
SPRET/EiJ	ENSMSPG00010018075	lncRNA gene	Chr13:106737782-106740768 (+)
WSB/EiJ	ENSIUOG00005009947	lncRNA gene	Chr13:105259801-105262818 (+)

Homology

• Gene Tree
  Gm33172
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000114775 (Evidence)
• NCBI Gene
  102635971

Representative Sequences			Length	Strain/Species
genomic	102635971	NCBI Gene Model | MGI Sequence Detail	2821	C57BL/6J
transcript	AK142521	GenBank | ENA | DDBJ | MGI Sequence Detail	1365	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121059	Chr13:110820203-110820208 (+)	-206 bp