Phox2bos Gene Detail

Summary

• Symbol
  Phox2bos
• Name
  paired-like homeobox 2b, opposite strand
• Synonyms
  Gm33167, Gm42712

• Feature Type
  lncRNA gene
• IDs
  MGI:5592326
  NCBI Gene: 102635966
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:67284846-67287488 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592326	lncRNA gene	Chr5:67256023-67287491 (+)
129S1/SvImJ	ENSMUSG00200036366	unclassified gene	Chr5:62918986-62921641 (+)
A/J	ENSMUSG00195034193	unclassified gene	Chr5:62273263-62275915 (+)
AKR/J	ENSMUSG00220004797	unclassified gene	Chr5:62411243-62413895 (+)
BALB/cJ	ENSMUSG00180024205	unclassified gene	Chr5:62066095-62068749 (+)
C3H/HeJ	ENSMUSG00175029374	unclassified gene	Chr5:64093588-64096242 (+)
C57BL/6NJ	ENSMUSG00215005713	unclassified gene	Chr5:62832228-62834872 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001377	unclassified gene	Chr5:60444770-60447382 (+)
CAST/EiJ	ENSTCUG00005033609	unclassified gene	Chr5:61988389-61991029 (+)
CBA/J	ENSMUSG00210023708	unclassified gene	Chr5:63006452-63009106 (+)
DBA/2J	ENSMUSG00185005601	unclassified gene	Chr5:64863980-64866632 (+)
FVB/NJ	ENSMUSG00205030591	unclassified gene	Chr5:61819311-61821959 (+)
JF1/MsJ	ENSUMUG00000022270	unclassified gene	Chr5:69375046-69377678 (+)
LP/J	ENSMUSG00230009437	unclassified gene	Chr5:69531551-69534204 (+)
NOD/ShiLtJ	ENSMUSG00190004281	unclassified gene	Chr5:61997997-62000649 (+)
NZO/HlLtJ	ENSMUSG00225010881	unclassified gene	Chr5:74637440-74640092 (+)
PWK/PhJ	ENSLUMG00010015097	unclassified gene	Chr5:61986639-61989274 (+)
SPRET/EiJ	ENSMSPG00010038583	unclassified gene	Chr5:63775124-63777789 (+)
WSB/EiJ	ENSIUOG00005018900	unclassified gene	Chr5:64977441-64980091 (+)

Homology

• Gene Tree
  Phox2bos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Phox2bos
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000106995 (Evidence)
• NCBI Gene
  102635966

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106995	Ensembl Gene Model | MGI Sequence Detail	2643	C57BL/6J
transcript	NR_166598	RefSeq | MGI Sequence Detail	1192	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662849, MGI:8353877

References

• Summaries
  All 25

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:387257 Di Lascio S, et al., Regulation of PHOX2B gene expression by the long non-coding natural antisense RNA PHOX2B-AS1. FEBS J. 2026 Jan 24;