Gm33125 Gene Detail

Summary

• Symbol
  Gm33125
• Name
  predicted gene, 33125

• Feature Type
  lncRNA gene
• IDs
  MGI:5592284
  NCBI Gene: 102635908
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:52334870-52340463 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  294 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592284	lncRNA gene	Chr9:52313334-52381646 (+)
129S1/SvImJ	ENSMUSG00200018699	lncRNA gene	Chr9:49473779-49540834 (+)
A/J	ENSMUSG00195024129	lncRNA gene	Chr9:49159531-49224766 (+)
AKR/J	ENSMUSG00220040433	lncRNA gene	Chr9:49262095-49330364 (+)
BALB/cJ	ENSMUSG00180032331	lncRNA gene	Chr9:49273683-49338919 (+)
C3H/HeJ	ENSMUSG00175016341	lncRNA gene	Chr9:49282802-49348028 (+)
C57BL/6NJ	ENSMUSG00215038985	lncRNA gene	Chr9:49246325-49314579 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015976	lncRNA gene	Chr9:49214724-49276620 (+)
CBA/J	ENSMUSG00210017065	lncRNA gene	Chr9:49359987-49425924 (+)
DBA/2J	ENSMUSG00185012573	lncRNA gene	Chr9:49401764-49469967 (+)
FVB/NJ	ENSMUSG00205043878	lncRNA gene	Chr9:49642172-49718096 (+)
JF1/MsJ	ENSUMUG00000045338	lncRNA gene	Chr9:49448985-49512639 (+)
LP/J	ENSMUSG00230042659	lncRNA gene	Chr9:49685163-49752209 (+)
NOD/ShiLtJ	ENSMUSG00190027207	lncRNA gene	Chr9:49477263-49542479 (+)
NZO/HlLtJ	ENSMUSG00225044458	lncRNA gene	Chr9:49658032-49726283 (+)
PWK/PhJ	ENSLUMG00010022759	lncRNA gene	Chr9:49416386-49479421 (+)
SPRET/EiJ	ENSMSPG00010011957	lncRNA gene	Chr9:50292953-50364010 (+)
WSB/EiJ	ENSIUOG00005021531	lncRNA gene	Chr9:48889040-48957251 (+)

Homology

• Gene Tree
  Gm33125
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  3

• Ensembl
  ENSMUSG00000111520 (Evidence)
• NCBI Gene
  102635908

Representative Sequences			Length	Strain/Species
genomic	102635908	NCBI Gene Model | MGI Sequence Detail	5594	C57BL/6J
transcript	XR_870744	RefSeq | MGI Sequence Detail	1728	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;