Gm33054 Gene Detail

Summary

• Symbol
  Gm33054
• Name
  predicted gene, 33054

• Feature Type
  lncRNA gene
• IDs
  MGI:5592213
  NCBI Gene: 102635808
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:103878959-103879558 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592213	lncRNA gene	Chr9:103878842-103880126 (-)
129S1/SvImJ	ENSMUSG00200016949	lncRNA gene	Chr9:101040351-101040974 (-)
A/J	ENSMUSG00195019555	lncRNA gene	Chr9:100264948-100265571 (-)
AKR/J	ENSMUSG00220042139	lncRNA gene	Chr9:100654587-100655210 (-)
BALB/cJ	ENSMUSG00180026938	lncRNA gene	Chr9:100581472-100582095 (-)
C3H/HeJ	ENSMUSG00175013902	lncRNA gene	Chr9:100924143-100924766 (-)
C57BL/6NJ	ENSMUSG00215026928	lncRNA gene	Chr9:100916378-100917001 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013468	lncRNA gene	Chr9:100724549-100725172 (-)
CBA/J	ENSMUSG00210015802	lncRNA gene	Chr9:100764900-100765523 (-)
DBA/2J	ENSMUSG00185012287	lncRNA gene	Chr9:100926424-100927047 (-)
FVB/NJ	ENSMUSG00205027049	lncRNA gene	Chr9:100925709-100926332 (-)
JF1/MsJ	ENSUMUG00000042799	lncRNA gene	Chr9:100773274-100773897 (-)
LP/J	ENSMUSG00230020723	lncRNA gene	Chr9:101075736-101076359 (-)
NOD/ShiLtJ	ENSMUSG00190043026	lncRNA gene	Chr9:100567188-100567811 (-)
NZO/HlLtJ	ENSMUSG00225020919	lncRNA gene	Chr9:101295893-101296516 (-)
PWK/PhJ	ENSLUMG00010028792	lncRNA gene	Chr9:100716496-100717118 (-)
SPRET/EiJ	ENSMSPG00010047246	lncRNA gene	Chr9:102582972-102583605 (-)
WSB/EiJ	ENSIUOG00005025649	lncRNA gene	Chr9:99993373-99994010 (-)

Homology

• Gene Tree
  Gm33054
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000111035 (Evidence)
• NCBI Gene
  102635808

Representative Sequences			Length	Strain/Species
genomic	102635808	NCBI Gene Model | MGI Sequence Detail	600	C57BL/6J
transcript	NR_168653	RefSeq | MGI Sequence Detail	333	ZRU/MplStud

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm33054:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91229	Chr9:103879549-103879561 (-)	3 bp