Gm33049 Gene Detail

Summary

• Symbol
  Gm33049
• Name
  predicted gene, 33049

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5592208
  NCBI Gene: 102635802
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:88738629-88746683 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  260 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592208	protein coding gene	Chr15:88726340-88746683 (+)
129S1/SvImJ	ENSMUSG00200036364	lncRNA gene	Chr15:85890796-85896760 (+)
A/J	ENSMUSG00195020705	lncRNA gene	Chr15:85812396-85818362 (+)
AKR/J	ENSMUSG00220033132	lncRNA gene	Chr15:85843004-85848967 (+)
BALB/cJ	ENSMUSG00180015630	lncRNA gene	Chr15:85666251-85672214 (+)
C3H/HeJ	ENSMUSG00175028322	lncRNA gene	Chr15:85999090-86005057 (+)
C57BL/6NJ	ENSMUSG00215033002	lncRNA gene	Chr15:85759786-85765751 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031378	lncRNA gene	Chr15:85266646-85272633 (+)
CBA/J	ENSMUSG00210013265	lncRNA gene	Chr15:85768563-85774528 (+)
DBA/2J	ENSMUSG00185023311	lncRNA gene	Chr15:85780438-85786401 (+)
FVB/NJ	ENSMUSG00205036524	lncRNA gene	Chr15:85535019-85541008 (+)
JF1/MsJ	ENSUMUG00000044076	lncRNA gene	Chr15:85353739-85359777 (+)
LP/J	ENSMUSG00230045301	lncRNA gene	Chr15:89130996-89136959 (+)
NOD/ShiLtJ	ENSMUSG00190029960	lncRNA gene	Chr15:85789167-85795130 (+)
NZO/HlLtJ	ENSMUSG00225050946	lncRNA gene	Chr15:89447559-89453522 (+)
PWK/PhJ	ENSLUMG00010036296	lncRNA gene	Chr15:85507332-85513299 (+)
SPRET/EiJ	ENSMSPG00010015081	lncRNA gene	Chr15:87209356-87215353 (+)
WSB/EiJ	ENSIUOG00005011723	lncRNA gene	Chr15:85875128-85881101 (+)

Homology

• Gene Tree
  Gm33049
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33049
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000120543 (Evidence)
• NCBI Gene
  102635802

Representative Sequences			Length	Strain/Species
genomic	102635802	NCBI Gene Model | MGI Sequence Detail	8055	C57BL/6J
transcript	XM_006521646	RefSeq | MGI Sequence Detail	780	C57BL/6J
polypeptide	XP_006521709	RefSeq | MGI Sequence Detail	254	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33049:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132618	Chr15:88738904-88738918 (+)	282 bp
Tssr132619	Chr15:88742791-88742800 (+)	4,167 bp
Tssr132620	Chr15:88742821-88742835 (+)	4,199 bp