Gm33045 Gene Detail

Summary

• Symbol
  Gm33045
• Name
  predicted gene, 33045

• Feature Type
  lncRNA gene
• IDs
  MGI:5592204
  NCBI Gene: 102635797
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:110763779-110779275 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  722 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592204	lncRNA gene	Chr13:110692632-110792705 (+)
129S1/SvImJ	ENSMUSG00200032874	lncRNA gene	Chr13:105217646-105234711 (+)
A/J	ENSMUSG00195013437	lncRNA gene	Chr13:105751019-105766328 (+)
AKR/J	ENSMUSG00220031674	lncRNA gene	Chr13:104175292-104190731 (+)
BALB/cJ	ENSMUSG00180031889	lncRNA gene	Chr13:106326264-106341702 (+)
C3H/HeJ	ENSMUSG00175027220	lncRNA gene	Chr13:106410555-106425865 (+)
C57BL/6NJ	ENSMUSG00215026999	lncRNA gene	Chr13:106421664-106437106 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026831	lncRNA gene	Chr13:105465214-105480737 (+)
CBA/J	ENSMUSG00210010709	lncRNA gene	Chr13:105737742-105753048 (+)
DBA/2J	ENSMUSG00185027704	lncRNA gene	Chr13:109495721-109511159 (+)
FVB/NJ	ENSMUSG00205007184	lncRNA gene	Chr13:105183008-105198322 (+)
JF1/MsJ	ENSUMUG00000012799	lncRNA gene	Chr13:108978502-108995567 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020648	lncRNA gene	Chr13:106035940-106053003 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010090	lncRNA gene	Chr13:105000380-105017478 (+)
SPRET/EiJ	ENSMSPG00010018036	lncRNA gene	Chr13:106680797-106696908 (+)
WSB/EiJ	ENSIUOG00005009955	lncRNA gene	Chr13:105203216-105218659 (+)

Homology

• Gene Tree
  Gm33045
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  76
• RefSeq
  3

• Ensembl
  ENSMUSG00000109853 (Evidence)
• NCBI Gene
  102635797

Representative Sequences			Length	Strain/Species
genomic	102635797	NCBI Gene Model | MGI Sequence Detail	15497	C57BL/6J
transcript	NR_167735	RefSeq | MGI Sequence Detail	1067	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121058	Chr13:110770293-110770295 (+)	6,515 bp