Gm32960 Gene Detail

Summary

• Symbol
  Gm32960
• Name
  predicted gene, 32960

• Feature Type
  lncRNA gene
• IDs
  MGI:5592119
  NCBI Gene: 102635685
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:38337148-38338056 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592119	lncRNA gene	Chr19:38336500-38381459 (+)
129S1/SvImJ	ENSMUSG00200032328	lncRNA gene	Chr19:35131926-35169215 (+)
A/J	ENSMUSG00195012137	lncRNA gene	Chr19:35231533-35268822 (+)
AKR/J	ENSMUSG00220018849	lncRNA gene	Chr19:35113021-35150315 (+)
BALB/cJ	ENSMUSG00180033637	lncRNA gene	Chr19:35559524-35596814 (+)
C3H/HeJ	ENSMUSG00175041335	lncRNA gene	Chr19:34993056-35030350 (+)
C57BL/6NJ	ENSMUSG00215029075	lncRNA gene	Chr19:35003644-35048001 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015656	lncRNA gene	Chr19:34677461-34714767 (+)
CBA/J	ENSMUSG00210037243	lncRNA gene	Chr19:35072296-35109588 (+)
DBA/2J	ENSMUSG00185034207	lncRNA gene	Chr19:35592452-35629749 (+)
FVB/NJ	ENSMUSG00205007925	lncRNA gene	Chr19:34836457-34873745 (+)
JF1/MsJ	ENSUMUG00000046256	lncRNA gene	Chr19:35734176-35771473 (+)
LP/J	ENSMUSG00230036038	lncRNA gene	Chr19:36403711-36440996 (+)
NOD/ShiLtJ	ENSMUSG00190011899	lncRNA gene	Chr19:34969719-35007011 (+)
NZO/HlLtJ	ENSMUSG00225029488	lncRNA gene	Chr19:39953584-39990868 (+)
PWK/PhJ	ENSLUMG00010001427	lncRNA gene	Chr19:35114640-35152395 (+)
SPRET/EiJ	ENSMSPG00010024489	lncRNA gene	Chr19:34839888-34883821 (+)
WSB/EiJ	ENSIUOG00005040313	lncRNA gene	Chr19:34483467-34520767 (+)

Homology

• Gene Tree
  Gm32960
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  2

• Ensembl
  ENSMUSG00000120254 (Evidence)
• NCBI Gene
  102635685

Representative Sequences			Length	Strain/Species
genomic	102635685	NCBI Gene Model | MGI Sequence Detail	909	C57BL/6J
transcript	NR_168068	RefSeq | MGI Sequence Detail	669	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm32960:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156256	Chr19:38337142-38337170 (+)	8 bp
Tssr156257	Chr19:38337179-38337191 (+)	37 bp