Gm32954 Gene Detail

Summary

• Symbol
  Gm32954
• Name
  predicted gene, 32954

• Feature Type
  lncRNA gene
• IDs
  MGI:5592113
  NCBI Gene: 102635677
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:79745728-79759202 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  636 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592113	lncRNA gene	Chr17:79745348-79759202 (-)
129S1/SvImJ	ENSMUSG00200024940	lncRNA gene	Chr17:75100359-75113068 (-)
A/J	ENSMUSG00195028347	lncRNA gene	Chr17:76461982-76474836 (-)
AKR/J	ENSMUSG00220013966	lncRNA gene	Chr17:75369687-75382539 (-)
BALB/cJ	ENSMUSG00180005022	lncRNA gene	Chr17:76171676-76184528 (-)
C3H/HeJ	ENSMUSG00175016711	lncRNA gene	Chr17:75442768-75455477 (-)
C57BL/6NJ	ENSMUSG00215015286	lncRNA gene	Chr17:75173391-75186254 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015559	lncRNA gene	Chr17:76036219-76049396 (-)
CBA/J	ENSMUSG00210020590	lncRNA gene	Chr17:75306095-75318804 (-)
DBA/2J	ENSMUSG00185012894	lncRNA gene	Chr17:78139626-78152335 (-)
FVB/NJ	ENSMUSG00205031888	lncRNA gene	Chr17:75920741-75933451 (-)
JF1/MsJ	ENSUMUG00000024876	lncRNA gene	Chr17:77852841-77865711 (-)
LP/J	ENSMUSG00230022101	lncRNA gene	Chr17:79141216-79153926 (-)
NOD/ShiLtJ	ENSMUSG00190009806	lncRNA gene	Chr17:75204844-75217557 (-)
NZO/HlLtJ	ENSMUSG00225031592	lncRNA gene	Chr17:81402184-81414893 (-)
PWK/PhJ	ENSLUMG00010005708	lncRNA gene	Chr17:75088322-75101145 (-)
SPRET/EiJ	ENSMSPG00010008917	lncRNA gene	Chr17:75573466-75586274 (-)
WSB/EiJ	ENSIUOG00005010683	lncRNA gene	Chr17:76139954-76152720 (-)

Homology

• Gene Tree
  Gm32954
  

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000120381 (Evidence)
• NCBI Gene
  102635677

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120381	Ensembl Gene Model | MGI Sequence Detail	13475	C57BL/6J
transcript	ENSMUST00000312543	Ensembl | MGI Sequence Detail	1146	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32954:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149445	Chr17:79759143-79759155 (-)	53 bp
Tssr149444	Chr17:79759078-79759093 (-)	116 bp
Tssr149443	Chr17:79759064-79759073 (-)	133 bp