Gm32840 Gene Detail

Summary

• Symbol
  Gm32840
• Name
  predicted gene, 32840

• Feature Type
  lncRNA gene
• IDs
  MGI:5591999
  NCBI Gene: 102635530
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:96942021-97004813 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1642 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591999	lncRNA gene	Chr15:96941888-97005498 (+)
129S1/SvImJ	ENSMUSG00200052384	lncRNA gene	Chr15:94136737-94199840 (+)
A/J	ENSMUSG00195045308	lncRNA gene	Chr15:93978232-94041320 (+)
AKR/J	ENSMUSG00220049616	lncRNA gene	Chr15:93988274-94051155 (+)
BALB/cJ	ENSMUSG00180048140	lncRNA gene	Chr15:93915238-93978347 (+)
C3H/HeJ	ENSMUSG00175046259	lncRNA gene	Chr15:94158508-94221570 (+)
C57BL/6NJ	ENSMUSG00215051390	lncRNA gene	Chr15:93978196-94041295 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047468	lncRNA gene	Chr15:93441498-93504720 (+)
CBA/J	ENSMUSG00210033370	lncRNA gene	Chr15:93948140-94011015 (+)
DBA/2J	ENSMUSG00185043620	lncRNA gene	Chr15:93998446-94061329 (+)
FVB/NJ	ENSMUSG00205046874	lncRNA gene	Chr15:93718431-93781551 (+)
JF1/MsJ	ENSUMUG00000057284	lncRNA gene	Chr15:93487581-93557643 (+)
LP/J	ENSMUSG00230040518	lncRNA gene	Chr15:97316388-97379487 (+)
NOD/ShiLtJ	ENSMUSG00190048740	lncRNA gene	Chr15:93996075-94059155 (+)
NZO/HlLtJ	ENSMUSG00225043630	lncRNA gene	Chr15:97620182-97682951 (+)
PWK/PhJ	ENSLUMG00010050685	lncRNA gene	Chr15:93641602-93704686 (+)
SPRET/EiJ	ENSMSPG00010049696	lncRNA gene	Chr15:95466519-95526745 (+)
WSB/EiJ	ENSIUOG00005041146	lncRNA gene	Chr15:94060107-94122972 (+)

Homology

• Gene Tree
  Gm32840
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  22
• Chemically induced (other)
  1
• Gene trapped
  21
• Genomic Mutations
  1 involving Gm32840
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  1

• Ensembl
  ENSMUSG00000120294 (Evidence)
• NCBI Gene
  102635530

Representative Sequences			Length	Strain/Species
genomic	102635530	NCBI Gene Model | MGI Sequence Detail	62793	C57BL/6J
transcript	XR_875626	RefSeq | MGI Sequence Detail	564	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32840:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132850	Chr15:96942052-96942070 (+)	40 bp