Gm32800 Gene Detail

Summary

• Symbol
  Gm32800
• Name
  predicted gene, 32800

• Feature Type
  lncRNA gene
• IDs
  MGI:5591959
  NCBI Gene: 102635471
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:167689030-167690784 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591959	lncRNA gene	Chr2:167680935-167690784 (-)
129S1/SvImJ	ENSMUSG00200040611	lncRNA gene	Chr2:164572776-164573450 (-)
A/J	ENSMUSG00195026206	lncRNA gene	Chr2:164918343-164919017 (-)
AKR/J	ENSMUSG00220035569	lncRNA gene	Chr2:164225645-164226319 (-)
BALB/cJ	ENSMUSG00180037040	lncRNA gene	Chr2:164371948-164372622 (-)
C3H/HeJ	ENSMUSG00175042033	lncRNA gene	Chr2:165143837-165144511 (-)
C57BL/6NJ	ENSMUSG00215030653	lncRNA gene	Chr2:164566714-164567388 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009616	lncRNA gene	Chr2:163451599-163452273 (-)
CBA/J	ENSMUSG00210042314	lncRNA gene	Chr2:165052263-165052937 (-)
DBA/2J	ENSMUSG00185026986	lncRNA gene	Chr2:164766014-164766688 (-)
FVB/NJ	ENSMUSG00205032222	lncRNA gene	Chr2:163798701-163799375 (-)
JF1/MsJ	ENSUMUG00000047600	lncRNA gene	Chr2:164408407-164409090 (-)
LP/J	ENSMUSG00230013529	lncRNA gene	Chr2:166333576-166334250 (-)
NOD/ShiLtJ	ENSMUSG00190043988	lncRNA gene	Chr2:164457220-164457894 (-)
NZO/HlLtJ	ENSMUSG00225003286	lncRNA gene	Chr2:174338916-174339590 (-)
PWK/PhJ	ENSLUMG00010040069	lncRNA gene	Chr2:164309905-164310588 (-)
SPRET/EiJ	ENSMSPG00010032616	lncRNA gene	Chr2:167071848-167072537 (-)
WSB/EiJ	ENSIUOG00005024922	lncRNA gene	Chr2:164162494-164163168 (-)

Homology

• Gene Tree
  Gm32800
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000121034 (Evidence)
• NCBI Gene
  102635471

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121034	Ensembl Gene Model | MGI Sequence Detail	1755	C57BL/6J
transcript	ENSMUST00000350882	Ensembl | MGI Sequence Detail	626	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27810	Chr2:167689743-167689754 (-)	1,035 bp