Gm32780 Gene Detail

Summary

• Symbol
  Gm32780
• Name
  predicted gene, 32780

• Feature Type
  lncRNA gene
• IDs
  MGI:5591939
  NCBI Gene: 102635444
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:76203761-76219026 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  496 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591939	lncRNA gene	Chr5:76203710-76219434 (+)
129S1/SvImJ	ENSMUSG00200001371	lncRNA gene	Chr5:71894176-71906984 (+)
A/J	ENSMUSG00195010844	lncRNA gene	Chr5:71190959-71203761 (+)
AKR/J	ENSMUSG00220015075	lncRNA gene	Chr5:71304125-71316924 (+)
BALB/cJ	ENSMUSG00180024982	lncRNA gene	Chr5:70965563-70978364 (+)
C3H/HeJ	ENSMUSG00175004283	lncRNA gene	Chr5:73009402-73022215 (+)
C57BL/6NJ	ENSMUSG00215000497	lncRNA gene	Chr5:71780151-71792952 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006070	lincRNA gene	Chr5:68973160-68985553 (+)
CAST/EiJ	ENSTCUG00005013721	lncRNA gene	Chr5:70755530-70768398 (+)
CBA/J	ENSMUSG00210000643	lncRNA gene	Chr5:71947394-71960208 (+)
DBA/2J	ENSMUSG00185017113	lncRNA gene	Chr5:73777340-73790153 (+)
FVB/NJ	ENSMUSG00205031789	lncRNA gene	Chr5:70713976-70726776 (+)
JF1/MsJ	ENSUMUG00000006780	lncRNA gene	Chr5:78259238-78271893 (+)
LP/J	ENSMUSG00230022908	lncRNA gene	Chr5:78468177-78480982 (+)
NOD/ShiLtJ	ENSMUSG00190007702	lncRNA gene	Chr5:70897746-70910547 (+)
NZO/HlLtJ	ENSMUSG00225034711	lncRNA gene	Chr5:83514822-83527622 (+)
PWK/PhJ	ENSLUMG00010007722	lncRNA gene	Chr5:70843832-70856637 (+)
SPRET/EiJ	ENSMSPG00010010305	lncRNA gene	Chr5:72833061-72846153 (+)
WSB/EiJ	ENSIUOG00005018455	lncRNA gene	Chr5:73727339-73740143 (+)

Homology

• Gene Tree
  Gm32780
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Spontaneous
  2
• Genomic Mutations
  5 involving Gm32780
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000106756 (Evidence)
• NCBI Gene
  102635444

Representative Sequences			Length	Strain/Species
genomic	102635444	NCBI Gene Model | MGI Sequence Detail	15266	C57BL/6J
transcript	XR_377047	RefSeq | MGI Sequence Detail	528	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:233978 Mizuno S, et al., Peri-implantation lethality in mice carrying megabase-scale deletion on 5qc3.3 is caused by Exoc1 null mutation. Sci Rep. 2015;5:13632