Gm32727 Gene Detail

Summary

• Symbol
  Gm32727
• Name
  predicted gene, 32727

• Feature Type
  lncRNA gene
• IDs
  MGI:5591886
  NCBI Gene: 102635370
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:76138510-76178133 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591886	lncRNA gene	Chr5:76137992-76178217 (+)
129S1/SvImJ	ENSMUSG00200001360	lncRNA gene	Chr5:71867475-71868580 (+)
A/J	ENSMUSG00195010829	lncRNA gene	Chr5:71164242-71165347 (+)
AKR/J	ENSMUSG00220015067	lncRNA gene	Chr5:71277414-71278519 (+)
BALB/cJ	ENSMUSG00180024949	lncRNA gene	Chr5:70938839-70939944 (+)
C3H/HeJ	ENSMUSG00175004280	lncRNA gene	Chr5:72982692-72983797 (+)
C57BL/6NJ	ENSMUSG00215000494	lncRNA gene	Chr5:71753418-71754523 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013703	lncRNA gene	Chr5:70728651-70729784 (+)
CBA/J	ENSMUSG00210000634	lncRNA gene	Chr5:71920690-71921795 (+)
DBA/2J	ENSMUSG00185017099	lncRNA gene	Chr5:73750640-73751745 (+)
FVB/NJ	ENSMUSG00205031697	lncRNA gene	Chr5:70687262-70688367 (+)
JF1/MsJ	ENSUMUG00000006770	lncRNA gene	Chr5:78230708-78231888 (+)
LP/J	ENSMUSG00230022662	lncRNA gene	Chr5:78441479-78442584 (+)
NOD/ShiLtJ	ENSMUSG00190007699	lncRNA gene	Chr5:70871031-70872136 (+)
NZO/HlLtJ	ENSMUSG00225034525	lncRNA gene	Chr5:83488089-83489194 (+)
PWK/PhJ	ENSLUMG00010007718	lncRNA gene	Chr5:70816916-70818063 (+)
SPRET/EiJ	ENSMSPG00010010294	lncRNA gene	Chr5:72806097-72807205 (+)
WSB/EiJ	ENSIUOG00005018439	lncRNA gene	Chr5:73700589-73701694 (+)

Homology

• Gene Tree
  Gm32727
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Spontaneous
  2
• Genomic Mutations
  5 involving Gm32727
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120170 (Evidence)
• NCBI Gene
  102635370

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120170	Ensembl Gene Model | MGI Sequence Detail	39624	C57BL/6J
transcript	ENSMUST00000244164	Ensembl | MGI Sequence Detail	1222	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:233978 Mizuno S, et al., Peri-implantation lethality in mice carrying megabase-scale deletion on 5qc3.3 is caused by Exoc1 null mutation. Sci Rep. 2015;5:13632

TSS for Gm32727:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46717	Chr5:76141882-76141905 (+)	3,384 bp
Tssr46718	Chr5:76177045-76177053 (+)	38,539 bp