Gm32673 Gene Detail

Summary

• Symbol
  Gm32673
• Name
  predicted gene, 32673

• Feature Type
  lncRNA gene
• IDs
  MGI:5591832
  NCBI Gene: 102635296
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr6:125409567-125435806 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  844 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591832	lncRNA gene	Chr6:125408082-125436686 (+)
129S1/SvImJ	ENSMUSG00200046578	lncRNA gene	Chr6:122472522-122498703 (+)
A/J	ENSMUSG00195049131	lncRNA gene	Chr6:121908905-121934857 (+)
AKR/J	ENSMUSG00220035806	lncRNA gene	Chr6:120770512-120796467 (+)
BALB/cJ	ENSMUSG00180050268	lncRNA gene	Chr6:122245943-122271887 (+)
C3H/HeJ	ENSMUSG00175038285	lncRNA gene	Chr6:121909788-121935744 (+)
C57BL/6NJ	ENSMUSG00215049245	lncRNA gene	Chr6:122232855-122259045 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051331	lncRNA gene	Chr6:122097628-122124125 (+)
CBA/J	ENSMUSG00210047057	lncRNA gene	Chr6:121946606-121972552 (+)
DBA/2J	ENSMUSG00185045240	lncRNA gene	Chr6:122646614-122672570 (+)
FVB/NJ	ENSMUSG00205051654	lncRNA gene	Chr6:121361178-121387123 (+)
JF1/MsJ	ENSUMUG00000053617	lncRNA gene	Chr6:121059611-121085560 (+)
LP/J	ENSMUSG00230044295	lncRNA gene	Chr6:123843249-123869929 (+)
NOD/ShiLtJ	ENSMUSG00190050796	lncRNA gene	Chr6:121618438-121644377 (+)
NZO/HlLtJ	ENSMUSG00225018345	lncRNA gene	Chr6:125873916-125899867 (+)
PWK/PhJ	ENSLUMG00010050243	lncRNA gene	Chr6:120318280-120344357 (+)
SPRET/EiJ	ENSMSPG00010042059	lncRNA gene	Chr6:123169560-123194891 (+)
WSB/EiJ	ENSIUOG00005046966	lncRNA gene	Chr6:122331028-122356990 (+)

Homology

• Gene Tree
  Gm32673
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  330
• Gene trapped
  330
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000120430 (Evidence)
• NCBI Gene
  102635296

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120430	Ensembl Gene Model | MGI Sequence Detail	26240	C57BL/6J
transcript	ENSMUST00000301973	Ensembl | MGI Sequence Detail	1615	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32673:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58975	Chr6:125409625-125409637 (+)	64 bp
Tssr58976	Chr6:125409642-125409653 (+)	81 bp
Tssr58977	Chr6:125409663-125409687 (+)	108 bp
Tssr58978	Chr6:125409694-125409715 (+)	138 bp
Tssr58979	Chr6:125409736-125409747 (+)	175 bp
Tssr58980	Chr6:125411290-125411295 (+)	1,726 bp