Gm32647 Gene Detail

Summary

• Symbol
  Gm32647
• Name
  predicted gene, 32647
• Synonyms
  Gm44905

• Feature Type
  lncRNA gene
• IDs
  MGI:5591806
  NCBI Gene: 102635262
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr7:93691898-94608431 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30757 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591806	lncRNA gene	Chr7:93691898-94976093 (+)
129S1/SvImJ	ENSMUSG00200028779	lncRNA gene	Chr7:80470578-81134271 (+)
A/J	ENSMUSG00195040063	lncRNA gene	Chr7:85003822-85685979 (+)
AKR/J	ENSMUSG00220044098	lncRNA gene	Chr7:78462309-79149489 (+)
BALB/cJ	ENSMUSG00180037858	lncRNA gene	Chr7:81672123-82361756 (+)
C3H/HeJ	ENSMUSG00175024976	lncRNA gene	Chr7:82354007-83026749 (+)
C57BL/6NJ	ENSMUSG00215038210	lncRNA gene	Chr7:81531909-82198473 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006589	lincRNA gene	Chr7:96865092-97172512 (+)
CAST/EiJ	ENSTCUG00005035018	lncRNA gene	Chr7:84918978-85606632 (+)
CBA/J	ENSMUSG00210025945	lncRNA gene	Chr7:82195657-82868370 (+)
DBA/2J	ENSMUSG00185034574	lncRNA gene	Chr7:86526858-87199629 (+)
FVB/NJ	ENSMUSG00205041803	lncRNA gene	Chr7:82173418-82853550 (+)
JF1/MsJ	ENSUMUG00000052305	lncRNA gene	Chr7:91458757-92147883 (+)
LP/J	ENSMUSG00230045420	lncRNA gene	Chr7:92614494-93287155 (+)
NOD/ShiLtJ	ENSMUSG00190022247	lncRNA gene	Chr7:82432578-83115250 (+)
NZO/HlLtJ	ENSMUSG00225051804	lncRNA gene	Chr7:90889647-91563473 (+)
PWK/PhJ	ENSLUMG00010041562	lncRNA gene	Chr7:80656132-81340131 (+)
SPRET/EiJ	ENSMSPG00010013428	lncRNA gene	Chr7:81809825-82550234 (+)
WSB/EiJ	ENSIUOG00005010798	lncRNA gene	Chr7:82830690-83496638 (+)

Homology

• Gene Tree
  Gm32647
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm32647
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000108532 (Evidence)
• NCBI Gene
  102635262

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108532	Ensembl Gene Model | MGI Sequence Detail	916534	C57BL/6J
transcript	ENSMUST00000206116	Ensembl | MGI Sequence Detail	3288	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5753481

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32647:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67884	Chr7:93691842-93691854 (+)	-50 bp
Tssr67885	Chr7:93691891-93691905 (+)	0 bp
Tssr67886	Chr7:93691925-93691936 (+)	33 bp
Tssr67887	Chr7:93691963-93691979 (+)	73 bp
Tssr67888	Chr7:93704584-93704586 (+)	12,687 bp
Tssr2329	Chr7:93790831-93790833 (+)	98,934 bp
Tssr2330	Chr7:94125190-94125196 (+)	433,295 bp