Gm32629 Gene Detail

Summary

• Symbol
  Gm32629
• Name
  predicted gene, 32629

• Feature Type
  lncRNA gene
• IDs
  MGI:5591788
  NCBI Gene: 102635239
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:20094749-20101192 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591788	lncRNA gene	Chr19:20094749-20101192 (-)
129S1/SvImJ	ENSMUSG00200020920	lncRNA gene	Chr19:16786518-16793048 (-)
A/J	ENSMUSG00195018505	lncRNA gene	Chr19:16969402-16975898 (-)
AKR/J	ENSMUSG00220011065	lncRNA gene	Chr19:16927263-16933699 (-)
BALB/cJ	ENSMUSG00180019953	lncRNA gene	Chr19:17320456-17326897 (-)
C3H/HeJ	ENSMUSG00175003862	lncRNA gene	Chr19:16666908-16673423 (-)
C57BL/6NJ	ENSMUSG00215021577	lncRNA gene	Chr19:16701784-16708227 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009059	lncRNA gene	Chr19:16562831-16569303 (-)
CBA/J	ENSMUSG00210012931	lncRNA gene	Chr19:16912083-16918573 (-)
DBA/2J	ENSMUSG00185013924	lncRNA gene	Chr19:17297368-17303885 (-)
FVB/NJ	ENSMUSG00205004365	lncRNA gene	Chr19:16730210-16736645 (-)
JF1/MsJ	ENSUMUG00000037650	lncRNA gene	Chr19:17542801-17549231 (-)
LP/J	ENSMUSG00230021884	lncRNA gene	Chr19:18151912-18158441 (-)
NOD/ShiLtJ	ENSMUSG00190021347	lncRNA gene	Chr19:16688334-16694775 (-)
NZO/HlLtJ	ENSMUSG00225034631	lncRNA gene	Chr19:21911854-21918302 (-)
PWK/PhJ	ENSLUMG00010008880	lncRNA gene	Chr19:16868983-16875412 (-)
SPRET/EiJ	ENSMSPG00010019376	lncRNA gene	Chr19:16864656-16871586 (-)
WSB/EiJ	ENSIUOG00005007418	lncRNA gene	Chr19:16430671-16437171 (-)

Homology

• Gene Tree
  Gm32629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000118067 (Evidence)
• NCBI Gene
  102635239

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118067	Ensembl Gene Model | MGI Sequence Detail	6444	C57BL/6J
transcript	ENSMUST00000256233	Ensembl | MGI Sequence Detail	733	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm32629:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158549	Chr19:20101274-20101283 (-)	-87 bp
Tssr158548	Chr19:20101254-20101272 (-)	-71 bp
Tssr158547	Chr19:20101231-20101238 (-)	-43 bp