Gm32554 Gene Detail

Summary

• Symbol
  Gm32554
• Name
  predicted gene, 32554
• Synonyms
  Gm43643

• Feature Type
  lncRNA gene
• IDs
  MGI:5591713
  NCBI Gene: 102635141
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:11184618-11227493 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  259 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591713	lncRNA gene	Chr5:11184618-11231824 (-)
129S1/SvImJ	ENSMUSG00200002899	lncRNA gene	Chr5:7767212-7783292 (+)
A/J	ENSMUSG00195012587	lncRNA gene	Chr5:7760369-7776642 (-)
AKR/J	ENSMUSG00220002228	lncRNA gene	Chr5:7717875-7823782 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215029902	lncRNA gene	Chr5:7200930-7200945 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185030031	lncRNA gene	Chr5:8219735-8236028 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000004161	lncRNA gene	Chr5:8919302-8935463 (-)
LP/J	ENSMUSG00230003894	lncRNA gene	Chr5:12780191-12796455 (-)
LP/J	ENSMUSG00230003561	lncRNA gene	Chr5:12225938-12241925 (-)
NOD/ShiLtJ	ENSMUSG00190013093	lncRNA gene	Chr5:7438091-7438177 (-)
NZO/HlLtJ	ENSMUSG00225009577	lncRNA gene	Chr5:16456995-16473243 (-)
NZO/HlLtJ	ENSMUSG00225009144	lncRNA gene	Chr5:15902498-15918729 (-)
PWK/PhJ	ENSLUMG00010019974	lncRNA gene	Chr5:7913222-7929333 (-)
SPRET/EiJ	ENSMSPG00010005252	lncRNA gene	Chr5:8060023-8075180 (-)
WSB/EiJ	ENSIUOG00005027355	lncRNA gene	Chr5:7699689-7699775 (+)

Homology

• Gene Tree
  Gm32554
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000104982 (Evidence)
• NCBI Gene
  102635141

Representative Sequences			Length	Strain/Species
genomic	102635141	NCBI Gene Model | MGI Sequence Detail	42876	C57BL/6J
transcript	XR_004942639	RefSeq | MGI Sequence Detail	1759	C57BL/6J

Other
Accession IDs

MGI:5663780

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm32554:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50121	Chr5:11227399-11227403 (-)	92 bp