Gm32540 Gene Detail

Summary

• Symbol
  Gm32540
• Name
  predicted gene, 32540

• Feature Type
  lncRNA gene
• IDs
  MGI:5591699
  NCBI Gene: 102635120
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:10905720-10916277 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  427 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591699	lncRNA gene	Chr8:10866379-10916295 (-)
129S1/SvImJ	ENSMUSG00200013692	lncRNA gene	Chr8:7748849-7798058 (-)
A/J	ENSMUSG00195011247	lncRNA gene	Chr8:8108289-8157510 (-)
AKR/J	ENSMUSG00220011779	lncRNA gene	Chr8:7837531-7886756 (-)
BALB/cJ	ENSMUSG00180005009	lncRNA gene	Chr8:7747354-7796584 (-)
C3H/HeJ	ENSMUSG00175008346	lncRNA gene	Chr8:7900270-7949482 (-)
C57BL/6NJ	ENSMUSG00215010503	lncRNA gene	Chr8:7781681-7830897 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020540	lncRNA gene	Chr8:7731113-7781584 (-)
CBA/J	ENSMUSG00210011125	lncRNA gene	Chr8:7741269-7790490 (-)
DBA/2J	ENSMUSG00185004407	lncRNA gene	Chr8:7874040-7923258 (-)
FVB/NJ	ENSMUSG00205005919	lncRNA gene	Chr8:7759479-7808700 (-)
JF1/MsJ	ENSUMUG00000045591	lncRNA gene	Chr8:7884309-7935918 (-)
LP/J	ENSMUSG00230023663	lncRNA gene	Chr8:10051769-10100976 (-)
NOD/ShiLtJ	ENSMUSG00190011850	lncRNA gene	Chr8:7859084-7908298 (-)
NZO/HlLtJ	ENSMUSG00225019150	lncRNA gene	Chr8:17908901-17958106 (-)
PWK/PhJ	ENSLUMG00010011730	lncRNA gene	Chr8:7802565-7854602 (-)
SPRET/EiJ	ENSMSPG00010017791	lncRNA gene	Chr8:7935343-7986069 (-)
WSB/EiJ	ENSIUOG00005004883	lncRNA gene	Chr8:7758001-7807238 (-)

Homology

• Gene Tree
  Gm32540
  

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  5

• Ensembl
  ENSMUSG00000108961 (Evidence)
• NCBI Gene
  102635120

Representative Sequences			Length	Strain/Species
genomic	102635120	NCBI Gene Model | MGI Sequence Detail	10558	C57BL/6J
transcript	XR_870138	RefSeq | MGI Sequence Detail	2848	C57BL/6J

References

• Summaries
  All 4

  Developmental Gene Expression 1
• Earliest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Gm32540:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80347	Chr8:10915998-10916082 (-)	237 bp
Tssr80346	Chr8:10915930-10915936 (-)	344 bp
Tssr80345	Chr8:10915315-10915329 (-)	955 bp
Tssr80344	Chr8:10915103-10915119 (-)	1,166 bp