Gm32474 Gene Detail

Summary

• Symbol
  Gm32474
• Name
  predicted gene, 32474

• Feature Type
  lncRNA gene
• IDs
  MGI:5591633
  NCBI Gene: 102635037
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:66059956-66071206 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  445 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591633	lncRNA gene	Chr5:66041281-66071206 (-)
129S1/SvImJ	ENSMUSG00200035930	lncRNA gene	Chr5:61660012-61687986 (-)
A/J	ENSMUSG00195034459	lncRNA gene	Chr5:61037252-61065237 (-)
AKR/J	ENSMUSG00220004464	lncRNA gene	Chr5:61171458-61199466 (-)
BALB/cJ	ENSMUSG00180006182	lncRNA gene	Chr5:60823073-60851090 (-)
C3H/HeJ	ENSMUSG00175028335	lncRNA gene	Chr5:62857085-62885113 (-)
C57BL/6NJ	ENSMUSG00215006166	lncRNA gene	Chr5:61588900-61616870 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031572	lncRNA gene	Chr5:60738438-60767469 (-)
CBA/J	ENSMUSG00210023840	lncRNA gene	Chr5:61770023-61798051 (-)
DBA/2J	ENSMUSG00185005634	lncRNA gene	Chr5:63627520-63655543 (-)
FVB/NJ	ENSMUSG00205011590	lncRNA gene	Chr5:60571205-60599213 (-)
JF1/MsJ	ENSUMUG00000020863	lncRNA gene	Chr5:68098313-68129645 (-)
LP/J	ENSMUSG00230009426	lncRNA gene	Chr5:68272719-68300691 (-)
NOD/ShiLtJ	ENSMUSG00190004365	lncRNA gene	Chr5:60762249-60790221 (-)
NZO/HlLtJ	ENSMUSG00225010865	lncRNA gene	Chr5:73398439-73426421 (-)
PWK/PhJ	ENSLUMG00010015038	lncRNA gene	Chr5:60703460-60732279 (-)
SPRET/EiJ	ENSMSPG00010037710	lncRNA gene	Chr5:62516334-62545979 (-)
WSB/EiJ	ENSIUOG00005018832	lncRNA gene	Chr5:63715122-63743129 (-)

Homology

• Gene Tree
  Gm32474
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm32474
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000120171 (Evidence)
• NCBI Gene
  102635037

Representative Sequences			Length	Strain/Species
genomic	102635037	NCBI Gene Model | MGI Sequence Detail	11251	C57BL/6J
transcript	XR_004942610	RefSeq | MGI Sequence Detail	1764	C57BL/6J

References

• Summaries
  All 22

  Phenotypes 19
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32474:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51147	Chr5:66069711-66069735 (-)	1,483 bp
Tssr51146	Chr5:66069667-66069692 (-)	1,526 bp
Tssr51145	Chr5:66069196-66069205 (-)	2,005 bp
Tssr51144	Chr5:66067863-66067887 (-)	3,331 bp