Gm32442 Gene Detail

Summary

• Symbol
  Gm32442
• Name
  predicted gene, 32442

• Feature Type
  lncRNA gene
• IDs
  MGI:5591601
  NCBI Gene: 102634993
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:5856311-5906147 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1223 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591601	lncRNA gene	Chr12:5856311-6035557 (+)
129S1/SvImJ	ENSMUSG00200024486	lncRNA gene	Chr12:2825822-3002710 (+)
A/J	ENSMUSG00195016771	lncRNA gene	Chr12:2866256-3043197 (+)
AKR/J	ENSMUSG00220032093	lncRNA gene	Chr12:2851632-3028542 (+)
BALB/cJ	ENSMUSG00180015218	lncRNA gene	Chr12:2862743-3039675 (+)
C3H/HeJ	ENSMUSG00175009897	lncRNA gene	Chr12:2829086-3007889 (+)
C57BL/6NJ	ENSMUSG00215027495	lncRNA gene	Chr12:2780015-2956908 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023941	lncRNA gene	Chr12:2674754-2848348 (+)
CBA/J	ENSMUSG00210013650	lncRNA gene	Chr12:2848770-3027560 (+)
DBA/2J	ENSMUSG00185021409	lncRNA gene	Chr12:2832768-3009655 (+)
FVB/NJ	ENSMUSG00205003331	lncRNA gene	Chr12:2632291-2808359 (+)
JF1/MsJ	ENSUMUG00000040875	lncRNA gene	Chr12:2842153-3017919 (+)
LP/J	ENSMUSG00230012253	lncRNA gene	Chr12:4660798-4837702 (+)
NOD/ShiLtJ	ENSMUSG00190008548	lncRNA gene	Chr12:4075053-4251945 (+)
NZO/HlLtJ	ENSMUSG00225019386	lncRNA gene	Chr12:6720923-6897821 (+)
PWK/PhJ	ENSLUMG00010017336	lncRNA gene	Chr12:2669433-2842313 (+)
SPRET/EiJ	ENSMSPG00010005389	lncRNA gene	Chr12:3112524-3284317 (+)
WSB/EiJ	ENSIUOG00005002418	lncRNA gene	Chr12:2843707-3022149 (+)

Homology

• Gene Tree
  Gm32442
  

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000112404 (Evidence)
• NCBI Gene
  102634993

Representative Sequences			Length	Strain/Species
genomic	102634993	NCBI Gene Model | MGI Sequence Detail	49837	C57BL/6J
transcript	AK135963	GenBank | ENA | DDBJ | MGI Sequence Detail	1974	C57BL/6J

Molecular
Reagents

• All nucleic 9

  cDNA 9

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm32442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112600	Chr12:5858193-5858200 (+)	1,886 bp
Tssr112601	Chr12:5858264-5858304 (+)	1,973 bp