Gm32261 Gene Detail

Summary

• Symbol
  Gm32261
• Name
  predicted gene, 32261

• Feature Type
  lncRNA gene
• IDs
  MGI:5591420
  NCBI Gene: 102634755
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:72714010-72717863 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591420	lncRNA gene	ChrX:72714010-72717908 (-)
129S1/SvImJ	ENSMUSG00200042992	lncRNA gene	ChrX:54774309-54776987 (-)
A/J	ENSMUSG00195037309	lncRNA gene	ChrX:58450595-58453254 (-)
AKR/J	ENSMUSG00220048098	lncRNA gene	ChrX:53752899-53755559 (-)
BALB/cJ	ENSMUSG00180050028	lncRNA gene	ChrX:55031322-55033973 (-)
C3H/HeJ	ENSMUSG00175038139	lncRNA gene	ChrX:58614999-58617654 (-)
C57BL/6NJ	ENSMUSG00215043064	lncRNA gene	ChrX:55115163-55117814 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043016	lncRNA gene	ChrX:56531899-56534554 (-)
CBA/J	ENSMUSG00210046305	lncRNA gene	ChrX:55295666-55298323 (-)
DBA/2J	ENSMUSG00185037038	lncRNA gene	ChrX:67717304-67719963 (-)
FVB/NJ	ENSMUSG00205043117	lncRNA gene	ChrX:54596636-54599291 (-)
JF1/MsJ	ENSUMUG00000045540	lncRNA gene	ChrX:88456824-88459486 (-)
LP/J	ENSMUSG00230036667	lncRNA gene	ChrX:74296472-74299143 (-)
NOD/ShiLtJ	ENSMUSG00190047057	lncRNA gene	ChrX:54535671-54538324 (-)
NZO/HlLtJ	ENSMUSG00225048761	lncRNA gene	ChrX:79500835-79503508 (-)
PWK/PhJ	ENSLUMG00010047103	lncRNA gene	ChrX:54277997-54280639 (-)
SPRET/EiJ	ENSMSPG00010037154	lncRNA gene	ChrX:57361423-57364053 (-)
WSB/EiJ	ENSIUOG00005050169	lncRNA gene	ChrX:55360713-55363382 (-)

Homology

• Gene Tree
  Gm32261
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  3

• Ensembl
  ENSMUSG00000120414 (Evidence)
• NCBI Gene
  102634755

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120414	Ensembl Gene Model | MGI Sequence Detail	3854	C57BL/6J
transcript	ENSMUST00000246677	Ensembl | MGI Sequence Detail	1778	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32261:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163558	ChrX:72716627-72716641 (-)	1,229 bp