Gm32085 Gene Detail

Summary

• Symbol
  Gm32085
• Name
  predicted gene, 32085

• Feature Type
  lncRNA gene
• IDs
  MGI:5591244
  NCBI Gene: 102634524
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:152408280-152416307 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  408 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591244	lncRNA gene	Chr3:152403689-152417862 (+)
129S1/SvImJ	ENSMUSG00200003778	lncRNA gene	Chr3:149368974-149376876 (+)
A/J	ENSMUSG00195003662	lncRNA gene	Chr3:149496028-149503930 (+)
AKR/J	ENSMUSG00220000502	lncRNA gene	Chr3:147902224-147910126 (+)
BALB/cJ	ENSMUSG00180027350	lncRNA gene	Chr3:149346141-149354041 (+)
C3H/HeJ	ENSMUSG00175019997	lncRNA gene	Chr3:148964586-148972488 (+)
C57BL/6NJ	ENSMUSG00215021168	lncRNA gene	Chr3:149606608-149614510 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001356	lncRNA gene	Chr3:150015893-150024280 (+)
CBA/J	ENSMUSG00210005152	lncRNA gene	Chr3:149606307-149614207 (+)
DBA/2J	ENSMUSG00185025424	lncRNA gene	Chr3:150232840-150240746 (+)
FVB/NJ	ENSMUSG00205009296	lncRNA gene	Chr3:148531265-148539169 (+)
JF1/MsJ	ENSUMUG00000036010	lncRNA gene	Chr3:148982329-148989997 (+)
LP/J	ENSMUSG00230019456	lncRNA gene	Chr3:152118200-152126100 (+)
NOD/ShiLtJ	ENSMUSG00190004762	lncRNA gene	Chr3:150586992-150594894 (+)
NZO/HlLtJ	ENSMUSG00225006029	lncRNA gene	Chr3:154627532-154635434 (+)
PWK/PhJ	ENSLUMG00010001935	lncRNA gene	Chr3:148922833-148930497 (+)
SPRET/EiJ	ENSMSPG00010008537	lncRNA gene	Chr3:150249611-150257406 (+)
WSB/EiJ	ENSIUOG00005015595	lncRNA gene	Chr3:149706768-149714641 (+)

Homology

• Gene Tree
  Gm32085
  

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  17

• Ensembl
  ENSMUSG00000119993 (Evidence)
• NCBI Gene
  102634524

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119993	Ensembl Gene Model | MGI Sequence Detail	8028	C57BL/6J
transcript	ENSMUST00000241385	Ensembl | MGI Sequence Detail	1908	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32417	Chr3:152408302-152408343 (+)	43 bp