Gm32017 Gene Detail

Summary

• Symbol
  Gm32017
• Name
  predicted gene, 32017

• Feature Type
  lncRNA gene
• IDs
  MGI:5591176
  NCBI Gene: 102634434
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:70837770-70841712 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591176	lncRNA gene	Chr9:70821409-70865275 (+)
129S1/SvImJ	ENSMUSG00200043437	lncRNA gene	Chr9:67934404-67938345 (+)
A/J	ENSMUSG00195026612	lncRNA gene	Chr9:67715791-67719733 (+)
AKR/J	ENSMUSG00220042108	lncRNA gene	Chr9:67853697-67857641 (+)
BALB/cJ	ENSMUSG00180019458	lncRNA gene	Chr9:67830132-67834075 (+)
C3H/HeJ	ENSMUSG00175014007	lncRNA gene	Chr9:67843486-67847428 (+)
C57BL/6NJ	ENSMUSG00215037075	lncRNA gene	Chr9:67784188-67788131 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034075	lncRNA gene	Chr9:67658550-67662464 (+)
CBA/J	ENSMUSG00210014661	lncRNA gene	Chr9:67924175-67928113 (+)
DBA/2J	ENSMUSG00185034663	lncRNA gene	Chr9:67947914-67951856 (+)
FVB/NJ	ENSMUSG00205034660	lncRNA gene	Chr9:68222192-68226136 (+)
JF1/MsJ	ENSUMUG00000041010	lncRNA gene	Chr9:68002528-68006431 (+)
LP/J	ENSMUSG00230027997	lncRNA gene	Chr9:68129544-68133485 (+)
NOD/ShiLtJ	ENSMUSG00190024151	lncRNA gene	Chr9:68046590-68050532 (+)
NZO/HlLtJ	ENSMUSG00225047005	lncRNA gene	Chr9:68247124-68251065 (+)
PWK/PhJ	ENSLUMG00010028060	lncRNA gene	Chr9:67920664-67924568 (+)
SPRET/EiJ	ENSMSPG00010022664	lncRNA gene	Chr9:68999624-69003537 (+)
WSB/EiJ	ENSIUOG00005027791	lncRNA gene	Chr9:67406009-67409940 (+)

Homology

• Gene Tree
  Gm32017
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm32017
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  6

• Ensembl
  ENSMUSG00000111631 (Evidence)
• NCBI Gene
  102634434

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111631	Ensembl Gene Model | MGI Sequence Detail	3943	C57BL/6J
transcript	ENSMUST00000215190	Ensembl | MGI Sequence Detail	1723	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85946	Chr9:70836052-70836061 (+)	-1,713 bp
Tssr85947	Chr9:70839061-70839071 (+)	1,296 bp
Tssr85948	Chr9:70839954-70839960 (+)	2,187 bp
Tssr85949	Chr9:70841555-70841558 (+)	3,787 bp