Gm32006 Gene Detail

Summary

• Symbol
  Gm32006
• Name
  predicted gene, 32006

• Feature Type
  lncRNA gene
• IDs
  MGI:5591165
  NCBI Gene: 102634421
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr8:120133283-120156316 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  874 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591165	lncRNA gene	Chr8:120133215-120157250 (-)
129S1/SvImJ	ENSMUSG00200043137	lncRNA gene	Chr8:114478697-114495669 (-)
A/J	ENSMUSG00195027099	lncRNA gene	Chr8:114763644-114780616 (-)
AKR/J	ENSMUSG00220043796	lncRNA gene	Chr8:114953990-114970961 (-)
BALB/cJ	ENSMUSG00180029363	lncRNA gene	Chr8:114809497-114826469 (-)
C3H/HeJ	ENSMUSG00175031709	lncRNA gene	Chr8:114865993-114882964 (-)
C57BL/6NJ	ENSMUSG00215032786	lncRNA gene	Chr8:114439754-114456726 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036628	lncRNA gene	Chr8:114178274-114195016 (-)
CBA/J	ENSMUSG00210037591	lncRNA gene	Chr8:114793337-114810309 (-)
DBA/2J	ENSMUSG00185018752	lncRNA gene	Chr8:120897321-120914292 (-)
FVB/NJ	ENSMUSG00205037748	lncRNA gene	Chr8:113774198-113791169 (-)
JF1/MsJ	ENSUMUG00000036910	lncRNA gene	Chr8:123189976-123206874 (-)
LP/J	ENSMUSG00230031505	lncRNA gene	Chr8:124532088-124549060 (-)
NOD/ShiLtJ	ENSMUSG00190021683	lncRNA gene	Chr8:114907824-114924795 (-)
NZO/HlLtJ	ENSMUSG00225043593	lncRNA gene	Chr8:127898055-127915026 (-)
PWK/PhJ	ENSLUMG00010039818	lncRNA gene	Chr8:114615660-114632687 (-)
SPRET/EiJ	ENSMSPG00010040146	lncRNA gene	Chr8:116810817-116827855 (-)
WSB/EiJ	ENSIUOG00005031657	lncRNA gene	Chr8:115611800-115628774 (-)

Homology

• Gene Tree
  Gm32006
  

Sequences &
Gene Models

• All Sequences
  93
• RefSeq
  2

• Ensembl
  ENSMUSG00000120233 (Evidence)
• NCBI Gene
  102634421

Representative Sequences			Length	Strain/Species
genomic	102634421	NCBI Gene Model | MGI Sequence Detail	23034	C57BL/6J
transcript	KY468206	GenBank | ENA | DDBJ | MGI Sequence Detail	318	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32006:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83123	Chr8:120155728-120155762 (-)	571 bp
Tssr83122	Chr8:120155667-120155676 (-)	644 bp
Tssr83121	Chr8:120153319-120153332 (-)	2,990 bp
Tssr83120	Chr8:120151708-120151741 (-)	4,591 bp
Tssr83119	Chr8:120151083-120151101 (-)	5,224 bp
Tssr83118	Chr8:120151069-120151082 (-)	5,240 bp
Tssr83117	Chr8:120144721-120144729 (-)	11,591 bp
Tssr83116	Chr8:120143657-120143667 (-)	12,654 bp