Gm32004 Gene Detail

Summary

• Symbol
  Gm32004
• Name
  predicted gene, 32004

• Feature Type
  lncRNA gene
• IDs
  MGI:5591163
  NCBI Gene: 102634419
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:107660250-107701845 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591163	lncRNA gene	Chr13:107660132-107701900 (-)
129S1/SvImJ	ENSMUSG00200032494	lncRNA gene	Chr13:102100894-102142487 (-)
A/J	ENSMUSG00195013964	lncRNA gene	Chr13:102659209-102701155 (-)
AKR/J	ENSMUSG00220031297	lncRNA gene	Chr13:101090391-101130875 (-)
BALB/cJ	ENSMUSG00180031097	lncRNA gene	Chr13:103234435-103276390 (-)
C3H/HeJ	ENSMUSG00175027487	lncRNA gene	Chr13:103328513-103370454 (-)
C57BL/6NJ	ENSMUSG00215029225	lncRNA gene	Chr13:103308732-103350359 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026786	lncRNA gene	Chr13:102413502-102453786 (-)
CBA/J	ENSMUSG00210010794	lncRNA gene	Chr13:102654159-102696098 (-)
DBA/2J	ENSMUSG00185027229	lncRNA gene	Chr13:106416138-106458080 (-)
FVB/NJ	ENSMUSG00205007579	lncRNA gene	Chr13:102082761-102124711 (-)
JF1/MsJ	ENSUMUG00000014178	lncRNA gene	Chr13:105930909-105971585 (-)
LP/J	ENSMUSG00230007814	lncRNA gene	Chr13:116569040-116610617 (-)
NOD/ShiLtJ	ENSMUSG00190019541	lncRNA gene	Chr13:102976865-103017368 (-)
NZO/HlLtJ	ENSMUSG00225037417	lncRNA gene	Chr13:108845119-108886622 (-)
PWK/PhJ	ENSLUMG00010010574	lncRNA gene	Chr13:101968865-102009442 (-)
SPRET/EiJ	ENSMSPG00010018165	lncRNA gene	Chr13:103584172-103624555 (-)
WSB/EiJ	ENSIUOG00005009846	lncRNA gene	Chr13:102111607-102152765 (-)

Homology

• Gene Tree
  Gm32004
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000114534 (Evidence)
• NCBI Gene
  102634419

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114534	Ensembl Gene Model | MGI Sequence Detail	41596	C57BL/6J
transcript	ENSMUST00000224949	Ensembl | MGI Sequence Detail	1918	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm32004:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123982	Chr13:107701839-107701850 (-)	0 bp
Tssr123981	Chr13:107701822-107701836 (-)	16 bp