Gm31940 Gene Detail

Summary

• Symbol
  Gm31940
• Name
  predicted gene, 31940

• Feature Type
  lncRNA gene
• IDs
  MGI:5591099
  NCBI Gene: 102634332
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:87280256-87285331 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  236 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591099	lncRNA gene	Chr3:87261304-87285331 (-)
129S1/SvImJ	ENSMUSG00200040511	lncRNA gene	Chr3:84129654-84131868 (-)
A/J	ENSMUSG00195053622	lncRNA gene	Chr3:84152172-84154386 (-)
AKR/J	ENSMUSG00220052406	lncRNA gene	Chr3:84105754-84107968 (-)
BALB/cJ	ENSMUSG00180049588	lncRNA gene	Chr3:84275355-84277569 (-)
C3H/HeJ	ENSMUSG00175048157	lncRNA gene	Chr3:84079964-84082178 (-)
C57BL/6NJ	ENSMUSG00215049964	lncRNA gene	Chr3:84525239-84527503 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049356	lncRNA gene	Chr3:83601367-83603574 (-)
CBA/J	ENSMUSG00210048720	lncRNA gene	Chr3:84222967-84225181 (-)
DBA/2J	ENSMUSG00185052807	lncRNA gene	Chr3:84364101-84366315 (-)
FVB/NJ	ENSMUSG00205051198	lncRNA gene	Chr3:83178511-83180725 (-)
JF1/MsJ	ENSUMUG00000050903	lncRNA gene	Chr3:83909391-83911613 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190049404	lncRNA gene	Chr3:84630811-84633025 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010052973	lncRNA gene	Chr3:84002058-84004277 (-)
SPRET/EiJ	ENSMSPG00010050243	lncRNA gene	Chr3:84831715-84833931 (-)
WSB/EiJ	ENSIUOG00005050856	lncRNA gene	Chr3:84601876-84604090 (-)

Homology

• Gene Tree
  Gm31940
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm31940
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000120576 (Evidence)
• NCBI Gene
  102634332

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120576	Ensembl Gene Model | MGI Sequence Detail	5076	C57BL/6J
transcript	ENSMUST00000322919	Ensembl | MGI Sequence Detail	1260	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31940:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33940	Chr3:87285113-87285128 (-)	210 bp