Gm31887 Gene Detail

Summary

• Symbol
  Gm31887
• Name
  predicted gene, 31887
• Synonyms
  Gm43385

• Feature Type
  lncRNA gene
• IDs
  MGI:5591046
  NCBI Gene: 102634258
• Alliance
  genome feature page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr13:19346206-19377728 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  916 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591046	lncRNA gene	Chr13:19329730-19377853 (-)
129S1/SvImJ	ENSMUSG00200014641	lncRNA gene	Chr13:16570981-16604866 (-)
A/J	ENSMUSG00195039233	lncRNA gene	Chr13:15705912-15739827 (-)
AKR/J	ENSMUSG00220033114	lncRNA gene	Chr13:15619376-15650954 (-)
BALB/cJ	ENSMUSG00180039230	lncRNA gene	Chr13:16066564-16100471 (-)
C3H/HeJ	ENSMUSG00175035513	lncRNA gene	Chr13:16170984-16202507 (-)
C57BL/6NJ	ENSMUSG00215029685	lncRNA gene	Chr13:16102588-16134111 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002806	antisense lncRNA gene	Chr13:14504078-14541783 (-)
CAST/EiJ	ENSTCUG00005014560	lncRNA gene	Chr13:16170412-16202199 (-)
CBA/J	ENSMUSG00210031345	lncRNA gene	Chr13:16025576-16057093 (-)
DBA/2J	ENSMUSG00185014851	lncRNA gene	Chr13:16726943-16758464 (-)
FVB/NJ	ENSMUSG00205052932	lncRNA gene	Chr13:15863034-15896941 (-)
JF1/MsJ	ENSUMUG00000021942	lncRNA gene	Chr13:16439979-16471563 (-)
LP/J	ENSMUSG00230035647	lncRNA gene	Chr13:26120348-26151918 (-)
NOD/ShiLtJ	ENSMUSG00190025069	lncRNA gene	Chr13:15999461-16030980 (-)
NZO/HlLtJ	ENSMUSG00225032420	lncRNA gene	Chr13:19865565-19897093 (-)
PWK/PhJ	ENSLUMG00010034668	lncRNA gene	Chr13:15447806-15465185 (-)
SPRET/EiJ	ENSMSPG00010020166	lncRNA gene	Chr13:15082424-15134422 (-)
WSB/EiJ	ENSIUOG00005035423	lncRNA gene	Chr13:15321572-15355488 (-)

Homology

• Gene Tree
  Gm31887
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm31887
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000105715 (Evidence)
• NCBI Gene
  102634258

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105715	Ensembl Gene Model | MGI Sequence Detail	31523	C57BL/6J
transcript	ENSMUST00000275190	Ensembl | MGI Sequence Detail	1085	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:5663522

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:71411 Arkell RM, et al., Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse. Mamm Genome. 2001 Sep;12(9):687-94
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for Gm31887:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121558	Chr13:19377848-19377852 (-)	-122 bp
Tssr121557	Chr13:19377783-19377792 (-)	-60 bp
Tssr121556	Chr13:19377771-19377778 (-)	-47 bp
Tssr121555	Chr13:19377755-19377768 (-)	-34 bp
Tssr121554	Chr13:19377723-19377740 (-)	-4 bp
Tssr121553	Chr13:19377665-19377684 (-)	53 bp
Tssr121552	Chr13:19377016-19377019 (-)	710 bp
Tssr121551	Chr13:19376961-19376973 (-)	761 bp
Tssr121550	Chr13:19376929-19376941 (-)	793 bp
Tssr121549	Chr13:19376907-19376919 (-)	815 bp
Tssr121548	Chr13:19376873-19376878 (-)	852 bp
Tssr121547	Chr13:19372779-19372785 (-)	4,946 bp
Tssr121546	Chr13:19369676-19369688 (-)	8,046 bp
Tssr121545	Chr13:19366526-19366539 (-)	11,195 bp