Gm31870 Gene Detail

Summary

• Symbol
  Gm31870
• Name
  predicted gene, 31870

• Feature Type
  lncRNA gene
• IDs
  MGI:5591029
  NCBI Gene: 102634238
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:193337779-193431621 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2072 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591029	lncRNA gene	Chr1:193293640-193468084 (+)
129S1/SvImJ	ENSMUSG00200004705	lncRNA gene	Chr1:191112033-191241319 (+)
A/J	ENSMUSG00195008859	lncRNA gene	Chr1:190691205-190821017 (+)
AKR/J	ENSMUSG00220005105	lncRNA gene	Chr1:189940486-190070299 (+)
BALB/cJ	ENSMUSG00180020485	lncRNA gene	Chr1:190762287-190892101 (+)
C3H/HeJ	ENSMUSG00175022242	lncRNA gene	Chr1:190944329-191074148 (+)
C57BL/6NJ	ENSMUSG00215020462	lncRNA gene	Chr1:190174271-190303556 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002238	lncRNA gene	Chr1:188722597-188852225 (+)
CBA/J	ENSMUSG00210003894	lncRNA gene	Chr1:190625253-190754568 (+)
DBA/2J	ENSMUSG00185010900	lncRNA gene	Chr1:195226030-195355332 (+)
FVB/NJ	ENSMUSG00205004872	lncRNA gene	Chr1:189604543-189734366 (+)
JF1/MsJ	ENSUMUG00000008621	lncRNA gene	Chr1:194197179-194331407 (+)
LP/J	ENSMUSG00230002325	lncRNA gene	Chr1:194750142-194879436 (+)
NOD/ShiLtJ	ENSMUSG00190032495	lncRNA gene	Chr1:190579510-190708531 (+)
NZO/HlLtJ	ENSMUSG00225016419	lncRNA gene	Chr1:198496720-198626007 (+)
PWK/PhJ	ENSLUMG00010006885	lncRNA gene	Chr1:189443504-189569813 (+)
SPRET/EiJ	ENSMSPG00010025833	lncRNA gene	Chr1:192955763-193089639 (+)
WSB/EiJ	ENSIUOG00005005175	lncRNA gene	Chr1:189921078-190050398 (+)

Homology

• Gene Tree
  Gm31870
  

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  1

• Ensembl
  ENSMUSG00000120108 (Evidence)
• NCBI Gene
  102634238

Representative Sequences			Length	Strain/Species
genomic	102634238	NCBI Gene Model | MGI Sequence Detail	93843	C57BL/6J
transcript	XR_001779912	RefSeq | MGI Sequence Detail	476	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31870:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10835	Chr1:193337943-193337976 (+)	181 bp