Gm31854 Gene Detail

Summary

• Symbol
  Gm31854
• Name
  predicted gene, 31854

• Feature Type
  lncRNA gene
• IDs
  MGI:5591013
  NCBI Gene: 102634215
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:84115770-84118080 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591013	lncRNA gene	Chr18:84107949-84120474 (-)
129S1/SvImJ	ENSMUSG00200015488	lncRNA gene	Chr18:81351633-81356231 (-)
A/J	ENSMUSG00195001354	lncRNA gene	Chr18:81426213-81430819 (-)
AKR/J	ENSMUSG00220016772	lncRNA gene	Chr18:81341990-81346596 (-)
BALB/cJ	ENSMUSG00180002617	lncRNA gene	Chr18:81992961-81997568 (-)
C3H/HeJ	ENSMUSG00175018897	lncRNA gene	Chr18:81540019-81544625 (-)
C57BL/6NJ	ENSMUSG00215027837	lncRNA gene	Chr18:80909862-80914470 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029354	lncRNA gene	Chr18:80453975-80458584 (-)
CBA/J	ENSMUSG00210018294	lncRNA gene	Chr18:81486316-81490922 (-)
DBA/2J	ENSMUSG00185004385	lncRNA gene	Chr18:81388797-81393403 (-)
FVB/NJ	ENSMUSG00205014170	lncRNA gene	Chr18:80795364-80799970 (-)
JF1/MsJ	ENSUMUG00000018102	lncRNA gene	Chr18:81245685-81250274 (-)
LP/J	ENSMUSG00230018547	lncRNA gene	Chr18:83440520-83445118 (-)
NOD/ShiLtJ	ENSMUSG00190003491	lncRNA gene	Chr18:81218752-81223345 (-)
NZO/HlLtJ	ENSMUSG00225023721	lncRNA gene	Chr18:83322851-83327450 (-)
PWK/PhJ	ENSLUMG00010004085	lncRNA gene	Chr18:81652630-81657225 (-)
SPRET/EiJ	ENSMSPG00010001334	lncRNA gene	Chr18:82021101-82025720 (-)
WSB/EiJ	ENSIUOG00005008558	lncRNA gene	Chr18:80838572-80843171 (-)

Homology

• Gene Tree
  Gm31854
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm31854
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000118225 (Evidence)
• NCBI Gene
  102634215

Representative Sequences			Length	Strain/Species
genomic	102634215	NCBI Gene Model | MGI Sequence Detail	2311	C57BL/6J
transcript	XR_877636	RefSeq | MGI Sequence Detail	515	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm31854:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154127	Chr18:84117471-84117510 (-)	589 bp