Gm31828 Gene Detail

Summary

• Symbol
  Gm31828
• Name
  predicted gene, 31828

• Feature Type
  lncRNA gene
• IDs
  MGI:5590987
  NCBI Gene: 102634183
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:93307076-93369623 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2074 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590987	lncRNA gene	Chr4:93258737-93369632 (-)
129S1/SvImJ	ENSMUSG00200010830	lncRNA gene	Chr4:88267690-88334415 (-)
A/J	ENSMUSG00195009919	lncRNA gene	Chr4:88859658-88922372 (-)
AKR/J	ENSMUSG00220020221	lncRNA gene	Chr4:88262995-88325559 (-)
BALB/cJ	ENSMUSG00180006302	lncRNA gene	Chr4:87807150-87869856 (-)
C3H/HeJ	ENSMUSG00175008347	lncRNA gene	Chr4:88746340-88809056 (-)
C57BL/6NJ	ENSMUSG00215021146	lncRNA gene	Chr4:88662906-88725448 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019266	lncRNA gene	Chr4:88128943-88199134 (-)
CBA/J	ENSMUSG00210016586	lncRNA gene	Chr4:88323011-88385721 (-)
DBA/2J	ENSMUSG00185003140	lncRNA gene	Chr4:89065010-89127558 (-)
FVB/NJ	ENSMUSG00205015778	lncRNA gene	Chr4:87232602-87295133 (-)
JF1/MsJ	ENSUMUG00000003336	lncRNA gene	Chr4:89237231-89304039 (-)
LP/J	ENSMUSG00230023580	lncRNA gene	Chr4:92378585-92445309 (-)
NOD/ShiLtJ	ENSMUSG00190018348	lncRNA gene	Chr4:87761161-87823877 (-)
NZO/HlLtJ	ENSMUSG00225003492	lncRNA gene	Chr4:97527249-97589791 (-)
PWK/PhJ	ENSLUMG00010003736	lncRNA gene	Chr4:86992846-87059629 (-)
SPRET/EiJ	ENSMSPG00010015767	lncRNA gene	Chr4:88892677-88958154 (-)
WSB/EiJ	ENSIUOG00005013070	lncRNA gene	Chr4:88075620-88138365 (-)

Homology

• Gene Tree
  Gm31828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm31828
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  5

• Ensembl
  ENSMUSG00000120651 (Evidence)
• NCBI Gene
  102634183

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120651	Ensembl Gene Model | MGI Sequence Detail	62548	C57BL/6J
transcript	ENSMUST00000332100	Ensembl | MGI Sequence Detail	2495	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm31828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42434	Chr4:93369592-93369627 (-)	13 bp