Gm31793 Gene Detail

Summary

• Symbol
  Gm31793
• Name
  predicted gene, 31793

• Feature Type
  lncRNA gene
• IDs
  MGI:5590952
  NCBI Gene: 102634137
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:130377765-130429037 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  765 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590952	lncRNA gene	Chr10:130377765-130429037 (+)
129S1/SvImJ	ENSMUSG00200013583	lncRNA gene	Chr10:126737071-126767482 (+)
A/J	no annotation
AKR/J	ENSMUSG00220006805	lncRNA gene	Chr10:126804218-126834627 (+)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175006278	lncRNA gene	Chr10:127180585-127205088 (+)
C57BL/6NJ	ENSMUSG00215024229	lncRNA gene	Chr10:126797386-126827800 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185027454	lncRNA gene	Chr10:127164236-127194646 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000047678	lncRNA gene	Chr10:128488917-128489805 (+)
LP/J	ENSMUSG00230034232	lncRNA gene	Chr10:129105132-129135543 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225013282	lncRNA gene	Chr10:133288899-133319309 (+)
PWK/PhJ	ENSLUMG00010010707	lncRNA gene	Chr10:126945326-126969725 (+)
SPRET/EiJ	ENSMSPG00010038179	lncRNA gene	Chr10:128894500-128920469 (+)
WSB/EiJ	ENSIUOG00005009306	lncRNA gene	Chr10:126846056-126870543 (+)

Homology

• Gene Tree
  Gm31793
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000112742 (Evidence)
• NCBI Gene
  102634137

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112742	Ensembl Gene Model | MGI Sequence Detail	51273	C57BL/6J
transcript	ENSMUST00000241548	Ensembl | MGI Sequence Detail	1690	Not Applicable
polypeptide	NP_001411789	RefSeq | MGI Sequence Detail	634	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31793:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96500	Chr10:130378194-130378228 (+)	446 bp
Tssr96501	Chr10:130380644-130380649 (+)	2,882 bp