Gm31785 Gene Detail

Summary

• Symbol
  Gm31785
• Name
  predicted gene, 31785

• Feature Type
  lncRNA gene
• IDs
  MGI:5590944
  NCBI Gene: 102634124
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:105346297-105365996 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  330 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590944	lncRNA gene	Chr5:105346254-105366182 (+)
129S1/SvImJ	ENSMUSG00200006449	lncRNA gene	Chr5:99078328-99098131 (+)
A/J	ENSMUSG00195035756	lncRNA gene	Chr5:98545785-98565932 (+)
AKR/J	ENSMUSG00220041587	lncRNA gene	Chr5:98093506-98113311 (+)
BALB/cJ	ENSMUSG00180037471	lncRNA gene	Chr5:98697928-98718075 (+)
C3H/HeJ	ENSMUSG00175035440	lncRNA gene	Chr5:100739347-100761390 (+)
C57BL/6NJ	ENSMUSG00215023106	lncRNA gene	Chr5:98743921-98763724 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210034859	lncRNA gene	Chr5:99497142-99519185 (+)
DBA/2J	ENSMUSG00185047614	lncRNA gene	Chr5:102428535-102448352 (+)
FVB/NJ	ENSMUSG00205042269	lncRNA gene	Chr5:98406580-98428626 (+)
JF1/MsJ	ENSUMUG00000017088	lncRNA gene	Chr5:105495797-105519664 (+)
LP/J	ENSMUSG00230032027	lncRNA gene	Chr5:106619656-106639457 (+)
NOD/ShiLtJ	ENSMUSG00190029347	lncRNA gene	Chr5:98511904-98531705 (+)
NZO/HlLtJ	ENSMUSG00225026360	lncRNA gene	Chr5:114241380-114261181 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005032676	lncRNA gene	Chr5:101136125-101156283 (+)

Homology

• Gene Tree
  Gm31785
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm31785
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000119978 (Evidence)
• NCBI Gene
  102634124

Representative Sequences			Length	Strain/Species
genomic	102634124	NCBI Gene Model | MGI Sequence Detail	19700	C57BL/6J
transcript	XR_389448	RefSeq | MGI Sequence Detail	595	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm31785:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47672	Chr5:105346253-105346276 (+)	-32 bp
Tssr47673	Chr5:105346283-105346297 (+)	-7 bp