Gm31749 Gene Detail

Summary

• Symbol
  Gm31749
• Name
  predicted gene, 31749

• Feature Type
  lncRNA gene
• IDs
  MGI:5590908
  NCBI Gene: 102634080
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:126624443-126635495 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590908	lncRNA gene	Chr7:126624443-126635495 (+)
129S1/SvImJ	ENSMUSG00200027538	lncRNA gene	Chr7:113142319-113146142 (+)
A/J	ENSMUSG00195045765	lncRNA gene	Chr7:117658004-117661827 (+)
AKR/J	ENSMUSG00220028956	lncRNA gene	Chr7:111090692-111094515 (+)
BALB/cJ	ENSMUSG00180014092	lncRNA gene	Chr7:114331521-114335344 (+)
C3H/HeJ	ENSMUSG00175018802	lncRNA gene	Chr7:115059015-115062838 (+)
C57BL/6NJ	ENSMUSG00215038526	lncRNA gene	Chr7:114338989-114342812 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004076	antisense lncRNA gene	Chr7:129071552-129075502 (+)
CAST/EiJ	ENSTCUG00005049468	lncRNA gene	Chr7:117556867-117560668 (+)
CBA/J	ENSMUSG00210023608	lncRNA gene	Chr7:114820085-114823908 (+)
DBA/2J	ENSMUSG00185051012	lncRNA gene	Chr7:119132935-119136758 (+)
FVB/NJ	ENSMUSG00205040686	lncRNA gene	Chr7:114778555-114782379 (+)
JF1/MsJ	ENSUMUG00000050357	lncRNA gene	Chr7:124187010-124190858 (+)
LP/J	ENSMUSG00230053331	lncRNA gene	Chr7:125242305-125246128 (+)
NOD/ShiLtJ	ENSMUSG00190020794	lncRNA gene	Chr7:114979089-114982912 (+)
NZO/HlLtJ	ENSMUSG00225012700	lncRNA gene	Chr7:123471790-123475613 (+)
PWK/PhJ	ENSLUMG00010041557	lncRNA gene	Chr7:113326376-113330199 (+)
SPRET/EiJ	ENSMSPG00010013972	lncRNA gene	Chr7:114596355-114600222 (+)
WSB/EiJ	ENSIUOG00005032589	lncRNA gene	Chr7:115681006-115684831 (+)

Homology

• Gene Tree
  Gm31749
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm31749
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000108617 (Evidence)
• NCBI Gene
  102634080

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108617	Ensembl Gene Model | MGI Sequence Detail	11053	C57BL/6J
transcript	ENSMUST00000373512	Ensembl | MGI Sequence Detail	2087	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:210018 Portmann T, et al., Behavioral abnormalities and circuit defects in the Basal Ganglia of a mouse model of 16p11.2 deletion syndrome. Cell Rep. 2014 May 22;7(4):1077-92
• Latest
  J:348233 Rusu A, et al., Day-to-day spontaneous social behaviours is quantitatively and qualitatively affected in a 16p11.2 deletion mouse model. Front Behav Neurosci. 2023;17:1294558