Gm31704 Gene Detail

Summary

• Symbol
  Gm31704
• Name
  predicted gene, 31704

• Feature Type
  lncRNA gene
• IDs
  MGI:5590863
  NCBI Gene: 102634016
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:88922583-88932960 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  370 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590863	lncRNA gene	Chr17:88920577-88932960 (-)
129S1/SvImJ	ENSMUSG00200022557	lncRNA gene	Chr17:84333851-84339733 (-)
A/J	ENSMUSG00195029935	lncRNA gene	Chr17:85733597-85739495 (-)
AKR/J	ENSMUSG00220016313	lncRNA gene	Chr17:84674196-84680098 (-)
BALB/cJ	ENSMUSG00180028170	lncRNA gene	Chr17:85405664-85411564 (-)
C3H/HeJ	ENSMUSG00175006992	lncRNA gene	Chr17:84676797-84682697 (-)
C57BL/6NJ	ENSMUSG00215018800	lncRNA gene	Chr17:84373718-84382873 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011890	lncRNA gene	Chr17:85249715-85255646 (-)
CBA/J	ENSMUSG00210022349	lncRNA gene	Chr17:84530106-84536006 (-)
DBA/2J	ENSMUSG00185021000	lncRNA gene	Chr17:87333164-87342319 (-)
FVB/NJ	ENSMUSG00205006206	lncRNA gene	Chr17:85150956-85160111 (-)
JF1/MsJ	ENSUMUG00000017684	lncRNA gene	Chr17:87085201-87091157 (-)
LP/J	ENSMUSG00230010871	lncRNA gene	Chr17:88375563-88384718 (-)
NOD/ShiLtJ	ENSMUSG00190009537	lncRNA gene	Chr17:84408410-84414370 (-)
NZO/HlLtJ	ENSMUSG00225031351	lncRNA gene	Chr17:90620485-90629648 (-)
PWK/PhJ	ENSLUMG00010032334	lncRNA gene	Chr17:84309254-84315196 (-)
SPRET/EiJ	ENSMSPG00010020365	lncRNA gene	Chr17:84884942-84890766 (-)
WSB/EiJ	ENSIUOG00005022969	lncRNA gene	Chr17:85341827-85351002 (-)

Homology

• Gene Tree
  Gm31704
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  22
• Gene trapped
  22
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000120436 (Evidence)
• NCBI Gene
  102634016

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120436	Ensembl Gene Model | MGI Sequence Detail	10378	C57BL/6J
transcript	ENSMUST00000243291	Ensembl | MGI Sequence Detail	1994	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm31704:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149808	Chr17:88932920-88932949 (-)	25 bp