Gm31659 Gene Detail

Summary

• Symbol
  Gm31659
• Name
  predicted gene, 31659

• Feature Type
  lncRNA gene
• IDs
  MGI:5590818
  NCBI Gene: 102633962
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:96535168-96544985 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  353 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590818	lncRNA gene	Chr8:96535168-96544985 (-)
129S1/SvImJ	ENSMUSG00200015308	lncRNA gene	Chr8:90897313-90907075 (-)
A/J	ENSMUSG00195004287	lncRNA gene	Chr8:91232178-91241947 (-)
AKR/J	ENSMUSG00220011883	lncRNA gene	Chr8:91269009-91278772 (-)
BALB/cJ	ENSMUSG00180004362	lncRNA gene	Chr8:91134263-91144031 (-)
C3H/HeJ	ENSMUSG00175002765	lncRNA gene	Chr8:91176617-91186393 (-)
C57BL/6NJ	ENSMUSG00215001373	lncRNA gene	Chr8:90807434-90817206 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017225	lncRNA gene	Chr8:90632251-90641499 (-)
CBA/J	ENSMUSG00210015561	lncRNA gene	Chr8:91112051-91121824 (-)
DBA/2J	ENSMUSG00185024238	lncRNA gene	Chr8:97220909-97230688 (-)
FVB/NJ	ENSMUSG00205017399	lncRNA gene	Chr8:90221706-90231470 (-)
JF1/MsJ	ENSUMUG00000045037	lncRNA gene	Chr8:99588598-99598364 (-)
LP/J	ENSMUSG00230008239	lncRNA gene	Chr8:100882316-100892085 (-)
NOD/ShiLtJ	ENSMUSG00190013246	lncRNA gene	Chr8:91237867-91247630 (-)
NZO/HlLtJ	ENSMUSG00225011333	lncRNA gene	Chr8:104287266-104297026 (-)
PWK/PhJ	ENSLUMG00010044027	lncRNA gene	Chr8:90960515-90970804 (-)
SPRET/EiJ	ENSMSPG00010006413	lncRNA gene	Chr8:92978827-92988329 (-)
WSB/EiJ	ENSIUOG00005006171	lncRNA gene	Chr8:91946061-91955614 (-)

Homology

• Gene Tree
  Gm31659
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  94
• Gene trapped
  94
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000110489 (Evidence)
• NCBI Gene
  102633962

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110489	Ensembl Gene Model | MGI Sequence Detail	9818	C57BL/6J
transcript	ENSMUST00000211989	Ensembl | MGI Sequence Detail	571	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm31659:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82565	Chr8:96544892-96544909 (-)	84 bp
Tssr82564	Chr8:96544308-96544331 (-)	665 bp