Gm31645 Gene Detail

Summary

• Symbol
  Gm31645
• Name
  predicted gene, 31645

• Feature Type
  lncRNA gene
• IDs
  MGI:5590804
  NCBI Gene: 102633946
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:74826658-74835193 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  327 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590804	lncRNA gene	Chr17:74826650-74835402 (-)
129S1/SvImJ	ENSMUSG00200039549	lncRNA gene	Chr17:70140703-70149078 (-)
A/J	ENSMUSG00195028155	lncRNA gene	Chr17:71526832-71535309 (-)
AKR/J	ENSMUSG00220018826	lncRNA gene	Chr17:70473818-70482234 (-)
BALB/cJ	ENSMUSG00180005110	lncRNA gene	Chr17:71253754-71262216 (-)
C3H/HeJ	ENSMUSG00175016082	lncRNA gene	Chr17:70516657-70525119 (-)
C57BL/6NJ	ENSMUSG00215031136	lncRNA gene	Chr17:70246252-70254714 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015620	lncRNA gene	Chr17:71109114-71117514 (-)
CBA/J	ENSMUSG00210030851	lncRNA gene	Chr17:70385838-70394297 (-)
DBA/2J	ENSMUSG00185013270	lncRNA gene	Chr17:73218951-73227414 (-)
FVB/NJ	ENSMUSG00205032053	lncRNA gene	Chr17:71017304-71025778 (-)
JF1/MsJ	ENSUMUG00000023610	lncRNA gene	Chr17:72894553-72902940 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190039129	lncRNA gene	Chr17:70289041-70297424 (-)
NZO/HlLtJ	ENSMUSG00225029058	lncRNA gene	Chr17:76478609-76487022 (-)
PWK/PhJ	ENSLUMG00010030353	lncRNA gene	Chr17:70120329-70128714 (-)
SPRET/EiJ	ENSMSPG00010017170	lncRNA gene	Chr17:70480459-70489138 (-)
WSB/EiJ	ENSIUOG00005010876	lncRNA gene	Chr17:71232325-71240767 (-)

Homology

• Gene Tree
  Gm31645
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  2

• Ensembl
  ENSMUSG00000117358 (Evidence)
• NCBI Gene
  102633946

Representative Sequences			Length	Strain/Species
genomic	102633946	NCBI Gene Model | MGI Sequence Detail	8536	C57BL/6J
transcript	XR_003952321	RefSeq | MGI Sequence Detail	1878	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31645:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149388	Chr17:74835057-74835101 (-)	114 bp
Tssr149387	Chr17:74834905-74834927 (-)	277 bp