Gm31619 Gene Detail

Summary

• Symbol
  Gm31619
• Name
  predicted gene, 31619

• Feature Type
  lncRNA gene
• IDs
  MGI:5590778
  NCBI Gene: 102633905
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:167417249-167431383 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  408 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590778	lncRNA gene	Chr2:167413205-167431403 (-)
129S1/SvImJ	ENSMUSG00200041200	lncRNA gene	Chr2:164294017-164308131 (-)
A/J	ENSMUSG00195025935	lncRNA gene	Chr2:164645955-164660072 (-)
AKR/J	ENSMUSG00220035410	lncRNA gene	Chr2:163953165-163967277 (-)
BALB/cJ	ENSMUSG00180037282	lncRNA gene	Chr2:164099560-164113676 (-)
C3H/HeJ	ENSMUSG00175042763	lncRNA gene	Chr2:164871433-164885549 (-)
C57BL/6NJ	ENSMUSG00215035562	lncRNA gene	Chr2:164294308-164308424 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009210	lncRNA gene	Chr2:163178896-163192901 (-)
CBA/J	ENSMUSG00210041601	lncRNA gene	Chr2:164779917-164794033 (-)
DBA/2J	ENSMUSG00185027274	lncRNA gene	Chr2:164493592-164507699 (-)
FVB/NJ	ENSMUSG00205030607	lncRNA gene	Chr2:163526264-163540377 (-)
JF1/MsJ	ENSUMUG00000048858	lncRNA gene	Chr2:164134342-164148403 (-)
LP/J	ENSMUSG00230013741	lncRNA gene	Chr2:166054843-166068956 (-)
NOD/ShiLtJ	ENSMUSG00190040748	lncRNA gene	Chr2:164184852-164198966 (-)
NZO/HlLtJ	ENSMUSG00225003385	lncRNA gene	Chr2:174066586-174080699 (-)
PWK/PhJ	ENSLUMG00010038081	lncRNA gene	Chr2:164035460-164049510 (-)
SPRET/EiJ	ENSMSPG00010032719	lncRNA gene	Chr2:166790660-166804578 (-)
WSB/EiJ	ENSIUOG00005025662	lncRNA gene	Chr2:163884937-163899029 (-)

Homology

• Gene Tree
  Gm31619
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  8

• Ensembl
  ENSMUSG00000120668 (Evidence)
• NCBI Gene
  102633905

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120668	Ensembl Gene Model | MGI Sequence Detail	14135	C57BL/6J
transcript	ENSMUST00000260111	Ensembl | MGI Sequence Detail	788	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31619:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27781	Chr2:167432437-167432447 (-)	-1,059 bp
Tssr27780	Chr2:167431323-167431377 (-)	33 bp
Tssr27779	Chr2:167419098-167419102 (-)	12,283 bp