Gm31616 Gene Detail

Summary

• Symbol
  Gm31616
• Name
  predicted gene, 31616

• Feature Type
  lncRNA gene
• IDs
  MGI:5590775
  NCBI Gene: 102633901
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:39243712-39245608 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590775	lncRNA gene	Chr10:39243705-39247415 (-)
129S1/SvImJ	ENSMUSG00200010016	lncRNA gene	Chr10:36098918-36100842 (-)
A/J	ENSMUSG00195017392	lncRNA gene	Chr10:36401536-36403461 (-)
AKR/J	ENSMUSG00220029899	lncRNA gene	Chr10:36078207-36080132 (-)
BALB/cJ	ENSMUSG00180017290	lncRNA gene	Chr10:36486830-36488754 (-)
C3H/HeJ	ENSMUSG00175012736	lncRNA gene	Chr10:36281186-36283111 (-)
C57BL/6NJ	ENSMUSG00215009933	lncRNA gene	Chr10:36031711-36033635 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029286	lncRNA gene	Chr10:36482983-36484917 (-)
CBA/J	ENSMUSG00210026158	lncRNA gene	Chr10:36174673-36176597 (-)
DBA/2J	ENSMUSG00185008695	lncRNA gene	Chr10:36327219-36329144 (-)
FVB/NJ	ENSMUSG00205013979	lncRNA gene	Chr10:36241803-36243727 (-)
JF1/MsJ	ENSUMUG00000035874	lncRNA gene	Chr10:36084488-36086409 (-)
LP/J	ENSMUSG00230015914	lncRNA gene	Chr10:38087974-38089899 (-)
NOD/ShiLtJ	ENSMUSG00190035418	lncRNA gene	Chr10:36455570-36457496 (-)
NZO/HlLtJ	ENSMUSG00225017694	lncRNA gene	Chr10:42414825-42416749 (-)
PWK/PhJ	ENSLUMG00010007962	lncRNA gene	Chr10:36211187-36213109 (-)
SPRET/EiJ	ENSMSPG00010020550	lncRNA gene	Chr10:37245893-37247825 (-)
WSB/EiJ	ENSIUOG00005015407	lncRNA gene	Chr10:35991684-35993605 (-)

Homology

• Gene Tree
  Gm31616
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm31616
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000119997 (Evidence)
• NCBI Gene
  102633901

Representative Sequences			Length	Strain/Species
genomic	102633901	NCBI Gene Model | MGI Sequence Detail	1897	C57BL/6J
transcript	NR_168582	RefSeq | MGI Sequence Detail	1255	ZRU/MplStud

References

• Summaries
  All 10

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm31616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97332	Chr10:39245556-39245591 (-)	34 bp