Gm31479 Gene Detail

Summary

• Symbol
  Gm31479
• Name
  predicted gene, 31479
• Synonyms
  Gm45443

• Feature Type
  lncRNA gene
• IDs
  MGI:5590638
  NCBI Gene: 102633721
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:45246564-45248998 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590638	lncRNA gene	Chr7:45244620-45252972 (+)
129S1/SvImJ	ENSMUSG00200031873	lncRNA gene	Chr7:32843961-32846380 (+)
A/J	ENSMUSG00195048821	lncRNA gene	Chr7:36876439-36878868 (+)
AKR/J	ENSMUSG00220009671	lncRNA gene	Chr7:31175692-31178121 (+)
BALB/cJ	ENSMUSG00180045686	lncRNA gene	Chr7:33751828-33754257 (+)
C3H/HeJ	ENSMUSG00175042764	lncRNA gene	Chr7:34279897-34282316 (+)
C57BL/6NJ	ENSMUSG00215046537	lncRNA gene	Chr7:33539380-33541809 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049734	lncRNA gene	Chr7:37282258-37284678 (+)
CAST/EiJ	ENSTCUG00005048689	lncRNA gene	Chr7:37262131-37264551 (+)
CBA/J	ENSMUSG00210050070	lncRNA gene	Chr7:34650383-34652812 (+)
DBA/2J	ENSMUSG00185049910	lncRNA gene	Chr7:38526706-38529125 (+)
FVB/NJ	ENSMUSG00205048238	lncRNA gene	Chr7:34194929-34197358 (+)
JF1/MsJ	ENSUMUG00000053971	lncRNA gene	Chr7:43006398-43008817 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050078	lncRNA gene	Chr7:34522627-34525056 (+)
NZO/HlLtJ	ENSMUSG00225018952	lncRNA gene	Chr7:42163530-42165962 (+)
PWK/PhJ	ENSLUMG00010049031	lncRNA gene	Chr7:33484667-33487088 (+)
SPRET/EiJ	ENSMSPG00010044542	lncRNA gene	Chr7:33254117-33256513 (+)
WSB/EiJ	ENSIUOG00005031675	lncRNA gene	Chr7:35069960-35072389 (+)

Homology

• Gene Tree
  Gm31479
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000109632 (Evidence)
• NCBI Gene
  102633721

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109632	Ensembl Gene Model | MGI Sequence Detail	2435	C57BL/6J
transcript	ENSMUST00000343378	Ensembl | MGI Sequence Detail	621	Not Applicable

Other
Accession IDs

MGI:5791279

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;