Gm31450 Gene Detail

Summary

• Symbol
  Gm31450
• Name
  predicted gene, 31450

• Feature Type
  lncRNA gene
• IDs
  MGI:5590609
  NCBI Gene: 102633686
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:16106267-16118809 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  434 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590609	lncRNA gene	Chr13:16106260-16120814 (+)
129S1/SvImJ	ENSMUSG00200014774	lncRNA gene	Chr13:13305368-13308371 (+)
A/J	ENSMUSG00195038995	lncRNA gene	Chr13:12403779-12406786 (+)
AKR/J	ENSMUSG00220034654	lncRNA gene	Chr13:12423221-12426231 (+)
BALB/cJ	ENSMUSG00180038011	lncRNA gene	Chr13:12758272-12761279 (+)
C3H/HeJ	ENSMUSG00175038420	lncRNA gene	Chr13:12854610-12857611 (+)
C57BL/6NJ	ENSMUSG00215032648	lncRNA gene	Chr13:12861761-12864762 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014388	lncRNA gene	Chr13:12981380-12984391 (+)
CBA/J	ENSMUSG00210031243	lncRNA gene	Chr13:12720198-12723199 (+)
DBA/2J	ENSMUSG00185014255	lncRNA gene	Chr13:13414984-13417985 (+)
FVB/NJ	ENSMUSG00205052226	lncRNA gene	Chr13:12626472-12629459 (+)
JF1/MsJ	ENSUMUG00000024318	lncRNA gene	Chr13:13252974-13255984 (+)
LP/J	ENSMUSG00230036535	lncRNA gene	Chr13:22823911-22826910 (+)
NOD/ShiLtJ	ENSMUSG00190026162	lncRNA gene	Chr13:12720116-12723127 (+)
NZO/HlLtJ	ENSMUSG00225032506	lncRNA gene	Chr13:16624858-16627855 (+)
PWK/PhJ	ENSLUMG00010031582	lncRNA gene	Chr13:12203671-12206632 (+)
SPRET/EiJ	ENSMSPG00010019623	lncRNA gene	Chr13:11846634-11849608 (+)
WSB/EiJ	ENSIUOG00005034779	lncRNA gene	Chr13:12053763-12056746 (+)

Homology

• Gene Tree
  Gm31450
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000114057 (Evidence)
• NCBI Gene
  102633686

Representative Sequences			Length	Strain/Species
genomic	102633686	NCBI Gene Model | MGI Sequence Detail	12543	C57BL/6J
transcript	XR_001780863	RefSeq | MGI Sequence Detail	220	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31450:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118424	Chr13:16104816-16104821 (+)	-1,448 bp
Tssr118425	Chr13:16106264-16106268 (+)	-1 bp