Gm31447 Gene Detail

Summary

• Symbol
  Gm31447
• Name
  predicted gene, 31447

• Feature Type
  lncRNA gene
• IDs
  MGI:5590606
  NCBI Gene: 102633682
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:69176607-69191850 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  596 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590606	lncRNA gene	Chr12:69166963-69191880 (+)
129S1/SvImJ	ENSMUSG00200033621	lncRNA gene	Chr12:61091297-61106736 (+)
A/J	ENSMUSG00195015618	lncRNA gene	Chr12:63777978-63793466 (+)
AKR/J	ENSMUSG00220015215	lncRNA gene	Chr12:61576036-61591476 (+)
BALB/cJ	ENSMUSG00180033998	lncRNA gene	Chr12:62777057-62792541 (+)
C3H/HeJ	ENSMUSG00175028160	lncRNA gene	Chr12:65871503-65886984 (+)
C57BL/6NJ	ENSMUSG00215030177	lncRNA gene	Chr12:62160198-62175440 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035255	lncRNA gene	Chr12:62129568-62144742 (+)
CBA/J	ENSMUSG00210030680	lncRNA gene	Chr12:62341458-62356940 (+)
DBA/2J	ENSMUSG00185004956	lncRNA gene	Chr12:64238704-64253946 (+)
FVB/NJ	ENSMUSG00205033373	lncRNA gene	Chr12:61970546-61986023 (+)
JF1/MsJ	ENSUMUG00000033075	lncRNA gene	Chr12:68207521-68222864 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013531	lncRNA gene	Chr12:61397275-61412719 (+)
NZO/HlLtJ	ENSMUSG00225039088	lncRNA gene	Chr12:73293370-73308809 (+)
PWK/PhJ	ENSLUMG00010031589	lncRNA gene	Chr12:62295138-62310272 (+)
SPRET/EiJ	ENSMSPG00010028018	lncRNA gene	Chr12:63981098-63996440 (+)
WSB/EiJ	ENSIUOG00005012370	lncRNA gene	Chr12:62037322-62052782 (+)

Homology

• Gene Tree
  Gm31447
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm31447
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000113158 (Evidence)
• NCBI Gene
  102633682

Representative Sequences			Length	Strain/Species
genomic	102633682	NCBI Gene Model | MGI Sequence Detail	15244	C57BL/6J
transcript	NR_168640	RefSeq | MGI Sequence Detail	387	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31447:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113617	Chr12:69176603-69176634 (+)	12 bp